miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 35445 0.67 0.221568
Target:  5'- -cUGACCGG-GCGCCaagguaaGCCguacccgccCGGCCAg -3'
miRNA:   3'- cuACUGGCCgCGCGG-------CGGaa-------GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 23466 0.69 0.166105
Target:  5'- --cGcCCGGCGCGaaGCCggcccgcugcUCGGCCGg -3'
miRNA:   3'- cuaCuGGCCGCGCggCGGa---------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 11100 0.68 0.179993
Target:  5'- --cGGCCGGCaGCGCCGCgCUgcugaaaauguUUGGCa- -3'
miRNA:   3'- cuaCUGGCCG-CGCGGCG-GA-----------AGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 26094 0.68 0.179993
Target:  5'- --gGGgCGGaCGCuGCCGCagcgUCGGCCAa -3'
miRNA:   3'- cuaCUgGCC-GCG-CGGCGga--AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 35092 0.68 0.180473
Target:  5'- --cGACCGGacuacucgccgccgaGCuGCCGCUggCGGCCGg -3'
miRNA:   3'- cuaCUGGCCg--------------CG-CGGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 17834 0.68 0.181921
Target:  5'- --aGGCCGaGCGCacccugggagcgccuGCCGCCcUCGGCgAg -3'
miRNA:   3'- cuaCUGGC-CGCG---------------CGGCGGaAGCCGgU- -5'
23044 3' -62.4 NC_005178.1 + 10249 0.68 0.200105
Target:  5'- cAUGGCCGGaCGCauCgGCCUgcCGGCCAc -3'
miRNA:   3'- cUACUGGCC-GCGc-GgCGGAa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12791 0.67 0.209229
Target:  5'- --cGACCGGCagucccuggaggucGCgGCCGCCaugUUCGGCg- -3'
miRNA:   3'- cuaCUGGCCG--------------CG-CGGCGG---AAGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 34712 0.67 0.210876
Target:  5'- --cGAcCCGGCGCGgcaucccugaaaCCGUCguucgggUCGGCCGg -3'
miRNA:   3'- cuaCU-GGCCGCGC------------GGCGGa------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7413 0.69 0.166105
Target:  5'- uGAUGGgcuuCCaGCGCGaCGCC-UCGGCCGg -3'
miRNA:   3'- -CUACU----GGcCGCGCgGCGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31890 0.69 0.164771
Target:  5'- cGUGACCgacgucgccgggauGGCGCuGCCgGUCaUCGGCCAu -3'
miRNA:   3'- cUACUGG--------------CCGCG-CGG-CGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 24582 0.7 0.145088
Target:  5'- gGAU-ACCGGCGaccuggGCCG-CUUCGGCCGc -3'
miRNA:   3'- -CUAcUGGCCGCg-----CGGCgGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12660 0.75 0.055918
Target:  5'- --cGGCCGGCGCGCUGgCgggUGGCCu -3'
miRNA:   3'- cuaCUGGCCGCGCGGCgGaa-GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 12119 0.75 0.062692
Target:  5'- --cGAUgGGCGCGCCGCCUgc-GCCGa -3'
miRNA:   3'- cuaCUGgCCGCGCGGCGGAagcCGGU- -5'
23044 3' -62.4 NC_005178.1 + 17406 0.73 0.088092
Target:  5'- cAUGGCCgGGCGCuauGCCGCCgcauacgaGGCCAg -3'
miRNA:   3'- cUACUGG-CCGCG---CGGCGGaag-----CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 26824 0.72 0.101348
Target:  5'- uGUGGCCaGCgGgGCUGUCUUCGGCCc -3'
miRNA:   3'- cUACUGGcCG-CgCGGCGGAAGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 28971 0.71 0.113285
Target:  5'- aGGUGACCcuGCGCGCCccugGCCUgggCGGCa- -3'
miRNA:   3'- -CUACUGGc-CGCGCGG----CGGAa--GCCGgu -5'
23044 3' -62.4 NC_005178.1 + 28224 0.7 0.133671
Target:  5'- -cUGAgCGGCGcCGCCGCUaUCcaGGCCGc -3'
miRNA:   3'- cuACUgGCCGC-GCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7880 0.7 0.137382
Target:  5'- cGUGACUGuGCGCGgCGCCgaugCGGUCc -3'
miRNA:   3'- cUACUGGC-CGCGCgGCGGaa--GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 33332 0.7 0.145088
Target:  5'- uGUGACgagGGCGacgaacagguCGCCGUCUUCGGUCAg -3'
miRNA:   3'- cUACUGg--CCGC----------GCGGCGGAAGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.