miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 24503 1.08 0.000141
Target:  5'- cGAUGACCGGCGCGCCGCCUUCGGCCAg -3'
miRNA:   3'- -CUACUGGCCGCGCGGCGGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 9723 0.67 0.216447
Target:  5'- --cGGCCGGCucgGCGaaGCCacCGGCCGc -3'
miRNA:   3'- cuaCUGGCCG---CGCggCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 21071 0.68 0.200105
Target:  5'- cGGUGG-CGGUGCuGCCGCCcaCGGCgAa -3'
miRNA:   3'- -CUACUgGCCGCG-CGGCGGaaGCCGgU- -5'
23044 3' -62.4 NC_005178.1 + 23535 0.68 0.179993
Target:  5'- --cGGCCGagcaGCGgGCCGgCUUCGcGCCGg -3'
miRNA:   3'- cuaCUGGC----CGCgCGGCgGAAGC-CGGU- -5'
23044 3' -62.4 NC_005178.1 + 27366 0.72 0.095834
Target:  5'- --aGGCCGGCGCGCugcugCGCCUggagcuucugcUCGGCg- -3'
miRNA:   3'- cuaCUGGCCGCGCG-----GCGGA-----------AGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 5009 0.73 0.076496
Target:  5'- cGAUGAUCagcgGGCG-GCCGCUggCGGCCAg -3'
miRNA:   3'- -CUACUGG----CCGCgCGGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 22325 0.66 0.265658
Target:  5'- --cGcCUGGCGgGCCaGCCUggCGGUCGg -3'
miRNA:   3'- cuaCuGGCCGCgCGG-CGGAa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12172 0.66 0.265658
Target:  5'- --aGG-CGGCGCGCC-Ca-UCGGCCAg -3'
miRNA:   3'- cuaCUgGCCGCGCGGcGgaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 28133 0.67 0.227967
Target:  5'- ---aGCUGGCGgGUCGCCaUCcuGGCCAg -3'
miRNA:   3'- cuacUGGCCGCgCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 16899 0.67 0.216447
Target:  5'- --gGAgCGGCGCGaCCagGCUaUCGGCCu -3'
miRNA:   3'- cuaCUgGCCGCGC-GG--CGGaAGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 33062 0.7 0.130053
Target:  5'- --gGuCCGGCGUGCCGCUcgauguagCGGCUAu -3'
miRNA:   3'- cuaCuGGCCGCGCGGCGGaa------GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 3808 0.75 0.054339
Target:  5'- cGAUGGcCCGGCGCGUCaGCUUgaaggUGGCCAg -3'
miRNA:   3'- -CUACU-GGCCGCGCGG-CGGAa----GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 17406 0.67 0.231523
Target:  5'- ---aGCCGGCGCggGCUGCCgagcugggcgaccUCGGCCc -3'
miRNA:   3'- cuacUGGCCGCG--CGGCGGa------------AGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 31963 0.75 0.057542
Target:  5'- cGAUGACCGGCaGCGCCaucCCggcgacgUCGGUCAc -3'
miRNA:   3'- -CUACUGGCCG-CGCGGc--GGa------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 18734 0.67 0.210876
Target:  5'- --gGACCgggagguacgGGCGCGCCGggauagucaCCUUaCGGCCu -3'
miRNA:   3'- cuaCUGG----------CCGCGCGGC---------GGAA-GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 28204 0.66 0.246216
Target:  5'- --cGACCGucagccccuGgGCGCCGCCaUCGGUg- -3'
miRNA:   3'- cuaCUGGC---------CgCGCGGCGGaAGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 3916 0.66 0.286326
Target:  5'- cGAUG-CgCGGCaaGCUGCUgugCGGCCGg -3'
miRNA:   3'- -CUACuG-GCCGcgCGGCGGaa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 4574 0.75 0.062692
Target:  5'- --aGGCCGGaGCGuuGCCgcUCGGCCAg -3'
miRNA:   3'- cuaCUGGCCgCGCggCGGa-AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 35051 0.67 0.222144
Target:  5'- --aGGCUGGUcgGCGCCucgGCCagcgCGGCCAa -3'
miRNA:   3'- cuaCUGGCCG--CGCGG---CGGaa--GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 26094 0.68 0.179993
Target:  5'- --gGGgCGGaCGCuGCCGCagcgUCGGCCAa -3'
miRNA:   3'- cuaCUgGCC-GCG-CGGCGga--AGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.