miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 35445 0.67 0.221568
Target:  5'- -cUGACCGG-GCGCCaagguaaGCCguacccgccCGGCCAg -3'
miRNA:   3'- cuACUGGCCgCGCGG-------CGGaa-------GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 35092 0.68 0.180473
Target:  5'- --cGACCGGacuacucgccgccgaGCuGCCGCUggCGGCCGg -3'
miRNA:   3'- cuaCUGGCCg--------------CG-CGGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 35051 0.67 0.222144
Target:  5'- --aGGCUGGUcgGCGCCucgGCCagcgCGGCCAa -3'
miRNA:   3'- cuaCUGGCCG--CGCGG---CGGaa--GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 34712 0.67 0.210876
Target:  5'- --cGAcCCGGCGCGgcaucccugaaaCCGUCguucgggUCGGCCGg -3'
miRNA:   3'- cuaCU-GGCCGCGC------------GGCGGa------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 34662 0.67 0.222144
Target:  5'- --cGACCGcCGCGCCcguaGCCUgaacccUGGCCAg -3'
miRNA:   3'- cuaCUGGCcGCGCGG----CGGAa-----GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 33332 0.7 0.145088
Target:  5'- uGUGACgagGGCGacgaacagguCGCCGUCUUCGGUCAg -3'
miRNA:   3'- cUACUGg--CCGC----------GCGGCGGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 33062 0.7 0.130053
Target:  5'- --gGuCCGGCGUGCCGCUcgauguagCGGCUAu -3'
miRNA:   3'- cuaCuGGCCGCGCGGCGGaa------GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31963 0.75 0.057542
Target:  5'- cGAUGACCGGCaGCGCCaucCCggcgacgUCGGUCAc -3'
miRNA:   3'- -CUACUGGCCG-CGCGGc--GGa------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31890 0.69 0.164771
Target:  5'- cGUGACCgacgucgccgggauGGCGCuGCCgGUCaUCGGCCAu -3'
miRNA:   3'- cUACUGG--------------CCGCG-CGG-CGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31400 0.66 0.246216
Target:  5'- -uUGGCUGGgGCGCgCGCgUUUGGgCGc -3'
miRNA:   3'- cuACUGGCCgCGCG-GCGgAAGCCgGU- -5'
23044 3' -62.4 NC_005178.1 + 30364 0.66 0.265658
Target:  5'- ----cCCGGCGCGUCGUCggcccCGGUCGc -3'
miRNA:   3'- cuacuGGCCGCGCGGCGGaa---GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 30136 0.66 0.279299
Target:  5'- uGAUGAUCGGCucccucaacaaGCGUgGCg-UCGGCUAu -3'
miRNA:   3'- -CUACUGGCCG-----------CGCGgCGgaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 28971 0.71 0.113285
Target:  5'- aGGUGACCcuGCGCGCCccugGCCUgggCGGCa- -3'
miRNA:   3'- -CUACUGGc-CGCGCGG----CGGAa--GCCGgu -5'
23044 3' -62.4 NC_005178.1 + 28288 0.76 0.048306
Target:  5'- gGGUGACCGGCGCugcgggaGCUGCCgg-GGCCGc -3'
miRNA:   3'- -CUACUGGCCGCG-------CGGCGGaagCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 28224 0.7 0.133671
Target:  5'- -cUGAgCGGCGcCGCCGCUaUCcaGGCCGc -3'
miRNA:   3'- cuACUgGCCGC-GCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 28204 0.66 0.246216
Target:  5'- --cGACCGucagccccuGgGCGCCGCCaUCGGUg- -3'
miRNA:   3'- cuaCUGGC---------CgCGCGGCGGaAGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 28133 0.67 0.227967
Target:  5'- ---aGCUGGCGgGUCGCCaUCcuGGCCAg -3'
miRNA:   3'- cuacUGGCCGCgCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 27366 0.72 0.095834
Target:  5'- --aGGCCGGCGCGCugcugCGCCUggagcuucugcUCGGCg- -3'
miRNA:   3'- cuaCUGGCCGCGCG-----GCGGA-----------AGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 27142 0.66 0.286326
Target:  5'- --cGGCCGGaaaauauCGCCGCCgcucgcaaGGCCAu -3'
miRNA:   3'- cuaCUGGCCgc-----GCGGCGGaag-----CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 26824 0.72 0.101348
Target:  5'- uGUGGCCaGCgGgGCUGUCUUCGGCCc -3'
miRNA:   3'- cUACUGGcCG-CgCGGCGGAAGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.