Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 17331 | 0.69 | 0.182369 |
Target: 5'- cGgGGCCgAGGUCGCCcagcucGGcagcccgcgCCGGCUg -3' miRNA: 3'- -CgCCGGgUCCAGCGG------CCaua------GGCCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 9443 | 0.68 | 0.213333 |
Target: 5'- cCGGCCUAgccgggacGGUCuGCCGGacguggugGUCCGGUa -3' miRNA: 3'- cGCCGGGU--------CCAG-CGGCCa-------UAGGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 22877 | 0.67 | 0.236405 |
Target: 5'- cGUGGCCCAGGcuaUCGCCG--AUgCGGaCg -3' miRNA: 3'- -CGCCGGGUCC---AGCGGCcaUAgGCC-Ga -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 32917 | 0.67 | 0.236405 |
Target: 5'- aGCGG-CguGGUCGCCGGcaugCCgauGGCUg -3' miRNA: 3'- -CGCCgGguCCAGCGGCCaua-GG---CCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 20326 | 0.67 | 0.242491 |
Target: 5'- cGCGGCCCu-GUCGCUGGaagaaGGCa -3' miRNA: 3'- -CGCCGGGucCAGCGGCCauaggCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 9659 | 0.66 | 0.268145 |
Target: 5'- cGCGGCCgGuGGcuUCGCCGag--CCGGCc -3' miRNA: 3'- -CGCCGGgU-CC--AGCGGCcauaGGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 31448 | 0.66 | 0.295946 |
Target: 5'- aGCuGCuCCAGGaacCGCUGGcggCCGGCUc -3' miRNA: 3'- -CGcCG-GGUCCa--GCGGCCauaGGCCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 11762 | 0.66 | 0.303237 |
Target: 5'- cGUGGCCCgagccauggGGGUucCGCCGcaggCCGGCc -3' miRNA: 3'- -CGCCGGG---------UCCA--GCGGCcauaGGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 14287 | 0.71 | 0.132176 |
Target: 5'- -aGGUCCAGGUCuUCGGc-UCCGGCa -3' miRNA: 3'- cgCCGGGUCCAGcGGCCauAGGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 34883 | 0.69 | 0.168427 |
Target: 5'- gGCGGCgCCA---CGCCGGUugucgCCGGCa -3' miRNA: 3'- -CGCCG-GGUccaGCGGCCAua---GGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 11876 | 0.66 | 0.303237 |
Target: 5'- cGCGGUcaCCAGGgcgGCCagGGUGUCCuGGUc -3' miRNA: 3'- -CGCCG--GGUCCag-CGG--CCAUAGG-CCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 1516 | 0.69 | 0.181888 |
Target: 5'- gGCGGCguaguugcacucaCCAGGUauaGCgCGGg--CCGGCUg -3' miRNA: 3'- -CGCCG-------------GGUCCAg--CG-GCCauaGGCCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 20761 | 0.69 | 0.187238 |
Target: 5'- cUGGCCCAGGUagcucuucaaGCCGGccaaGUCCuuGGCg -3' miRNA: 3'- cGCCGGGUCCAg---------CGGCCa---UAGG--CCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 31267 | 0.68 | 0.204659 |
Target: 5'- gGCGaacGUCCAGGcgaugauccgaUUGCCGGUgaugaccaggaccagGUCCGGCUc -3' miRNA: 3'- -CGC---CGGGUCC-----------AGCGGCCA---------------UAGGCCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 9095 | 0.68 | 0.213333 |
Target: 5'- cGCGGCauugcuCCAGGUCgaaGCCGGcaa-CGGCg -3' miRNA: 3'- -CGCCG------GGUCCAG---CGGCCauagGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 30861 | 0.66 | 0.261532 |
Target: 5'- cCGGCCCAGGUCgagGCCGcGaccgcugCCaGGCg -3' miRNA: 3'- cGCCGGGUCCAG---CGGC-Caua----GG-CCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 20464 | 0.66 | 0.273531 |
Target: 5'- uUGGCCagguuGGUCGCCuGGgcguccagggCCGGCUu -3' miRNA: 3'- cGCCGGgu---CCAGCGG-CCaua-------GGCCGA- -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 12816 | 0.66 | 0.274892 |
Target: 5'- cGCGGCgCAGGgcgUCGCgGGUuuccuUCgGGUg -3' miRNA: 3'- -CGCCGgGUCC---AGCGgCCAu----AGgCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 32081 | 0.66 | 0.281773 |
Target: 5'- -aGGgUCAGGUCGUCGGcGUgggUCGGCa -3' miRNA: 3'- cgCCgGGUCCAGCGGCCaUA---GGCCGa -5' |
|||||||
23045 | 3' | -62.4 | NC_005178.1 | + | 31651 | 0.66 | 0.303237 |
Target: 5'- gGCGGaCCAGGUCcagGCCGG----CGGCg -3' miRNA: 3'- -CGCCgGGUCCAG---CGGCCauagGCCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home