miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23045 3' -62.4 NC_005178.1 + 24640 0.97 0.001207
Target:  5'- aGC-GCCCAGGUCGCCGGUAUCCGGCUu -3'
miRNA:   3'- -CGcCGGGUCCAGCGGCCAUAGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 21092 0.77 0.040673
Target:  5'- cGCGGCCCAGGUaggucagGCCGGUGg-CGGUg -3'
miRNA:   3'- -CGCCGGGUCCAg------CGGCCAUagGCCGa -5'
23045 3' -62.4 NC_005178.1 + 5880 0.75 0.064141
Target:  5'- gGCGGCCguugCGGGUCa--GGUAUCCGGCg -3'
miRNA:   3'- -CGCCGG----GUCCAGcggCCAUAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 10294 0.74 0.078124
Target:  5'- cCGGCCau-GUCGCggaCGGUAUCCGGCa -3'
miRNA:   3'- cGCCGGgucCAGCG---GCCAUAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 25137 0.73 0.08738
Target:  5'- aGCGGCCgAgcuGGUCGCgcUGGUGUCCuGCUg -3'
miRNA:   3'- -CGCCGGgU---CCAGCG--GCCAUAGGcCGA- -5'
23045 3' -62.4 NC_005178.1 + 32281 0.73 0.09606
Target:  5'- gGCGGCCCAGGgcggCGUcgauggccaaacgcuCGGUGU-CGGCg -3'
miRNA:   3'- -CGCCGGGUCCa---GCG---------------GCCAUAgGCCGa -5'
23045 3' -62.4 NC_005178.1 + 33532 0.72 0.112154
Target:  5'- aGUGGUCCAGGUCgGCaCGGUGUgCaGGUg -3'
miRNA:   3'- -CGCCGGGUCCAG-CG-GCCAUAgG-CCGa -5'
23045 3' -62.4 NC_005178.1 + 5923 0.71 0.115282
Target:  5'- gGCGGCCgAGG--GCCGGUGUagCGGCc -3'
miRNA:   3'- -CGCCGGgUCCagCGGCCAUAg-GCCGa -5'
23045 3' -62.4 NC_005178.1 + 4028 0.71 0.128274
Target:  5'- aGCGGCCgGGccucGUCGUCGGUgacgcgcAUCgGGCUg -3'
miRNA:   3'- -CGCCGGgUC----CAGCGGCCA-------UAGgCCGA- -5'
23045 3' -62.4 NC_005178.1 + 14287 0.71 0.132176
Target:  5'- -aGGUCCAGGUCuUCGGc-UCCGGCa -3'
miRNA:   3'- cgCCGGGUCCAGcGGCCauAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 31371 0.7 0.150515
Target:  5'- cGCGGCgCCAGGcgcauagcccggCGCUGG-GUCaCGGCUg -3'
miRNA:   3'- -CGCCG-GGUCCa-----------GCGGCCaUAG-GCCGA- -5'
23045 3' -62.4 NC_005178.1 + 5210 0.7 0.155448
Target:  5'- cCGGCgCCAGGUUGCgGGcGUCCuccagagacacuGGCUg -3'
miRNA:   3'- cGCCG-GGUCCAGCGgCCaUAGG------------CCGA- -5'
23045 3' -62.4 NC_005178.1 + 34883 0.69 0.168427
Target:  5'- gGCGGCgCCA---CGCCGGUugucgCCGGCa -3'
miRNA:   3'- -CGCCG-GGUccaGCGGCCAua---GGCCGa -5'
23045 3' -62.4 NC_005178.1 + 1516 0.69 0.181888
Target:  5'- gGCGGCguaguugcacucaCCAGGUauaGCgCGGg--CCGGCUg -3'
miRNA:   3'- -CGCCG-------------GGUCCAg--CG-GCCauaGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 17331 0.69 0.182369
Target:  5'- cGgGGCCgAGGUCGCCcagcucGGcagcccgcgCCGGCUg -3'
miRNA:   3'- -CgCCGGgUCCAGCGG------CCaua------GGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 20761 0.69 0.187238
Target:  5'- cUGGCCCAGGUagcucuucaaGCCGGccaaGUCCuuGGCg -3'
miRNA:   3'- cGCCGGGUCCAg---------CGGCCa---UAGG--CCGa -5'
23045 3' -62.4 NC_005178.1 + 31267 0.68 0.204659
Target:  5'- gGCGaacGUCCAGGcgaugauccgaUUGCCGGUgaugaccaggaccagGUCCGGCUc -3'
miRNA:   3'- -CGC---CGGGUCC-----------AGCGGCCA---------------UAGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 9095 0.68 0.213333
Target:  5'- cGCGGCauugcuCCAGGUCgaaGCCGGcaa-CGGCg -3'
miRNA:   3'- -CGCCG------GGUCCAG---CGGCCauagGCCGa -5'
23045 3' -62.4 NC_005178.1 + 9443 0.68 0.213333
Target:  5'- cCGGCCUAgccgggacGGUCuGCCGGacguggugGUCCGGUa -3'
miRNA:   3'- cGCCGGGU--------CCAG-CGGCCa-------UAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 22877 0.67 0.236405
Target:  5'- cGUGGCCCAGGcuaUCGCCG--AUgCGGaCg -3'
miRNA:   3'- -CGCCGGGUCC---AGCGGCcaUAgGCC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.