Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 3665 | 0.7 | 0.41137 |
Target: 5'- aCCAGagccuguGGAUUCgCGCCGCcaagGAaCUGCc -3' miRNA: 3'- -GGUCgu-----CCUAAG-GCGGCGa---CUaGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 4119 | 0.72 | 0.306643 |
Target: 5'- gCCAGCAGGGUgugggUCUacgacggcgaggGCCGCUuccUCUGCa -3' miRNA: 3'- -GGUCGUCCUA-----AGG------------CGGCGAcu-AGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 4949 | 0.68 | 0.52463 |
Target: 5'- gCCAGCGG----CCGcCCGCUGAUCa-- -3' miRNA: 3'- -GGUCGUCcuaaGGC-GGCGACUAGacg -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 5028 | 0.68 | 0.52463 |
Target: 5'- aCCAGguGGuccAUUUCGUCGaUGAUCaGCg -3' miRNA: 3'- -GGUCguCC---UAAGGCGGCgACUAGaCG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 8912 | 0.72 | 0.291307 |
Target: 5'- gCCAGCAGGAUcggcccggcuUCCGUgCGCUGGgggUGUg -3' miRNA: 3'- -GGUCGUCCUA----------AGGCG-GCGACUag-ACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 11767 | 0.73 | 0.276578 |
Target: 5'- cCCgAGCcaugGGGGUUCCGCCGCaggccGGcCUGCa -3' miRNA: 3'- -GG-UCG----UCCUAAGGCGGCGa----CUaGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 13560 | 0.67 | 0.579988 |
Target: 5'- gCGGCGGGucagCGUCGuCUGAUCcGCg -3' miRNA: 3'- gGUCGUCCuaagGCGGC-GACUAGaCG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 13814 | 0.75 | 0.206041 |
Target: 5'- cCCAGCuugcggGGGAgUUCCGCCGCcaGAUCgagGCc -3' miRNA: 3'- -GGUCG------UCCU-AAGGCGGCGa-CUAGa--CG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 16045 | 0.7 | 0.392436 |
Target: 5'- gUAGCGGGcuGUUCCGCgUGCUGGcCUGg -3' miRNA: 3'- gGUCGUCC--UAAGGCG-GCGACUaGACg -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 16436 | 0.66 | 0.62514 |
Target: 5'- cCCAgggcGUAGGcg-CCGCCGCccgacucgcUGGUCUGg -3' miRNA: 3'- -GGU----CGUCCuaaGGCGGCG---------ACUAGACg -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 16698 | 0.69 | 0.43086 |
Target: 5'- gCAGCGGGAUUCCcaGCUGCUc--CUGg -3' miRNA: 3'- gGUCGUCCUAAGG--CGGCGAcuaGACg -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 20793 | 0.68 | 0.52463 |
Target: 5'- aCCAGCuGGAcgaggCCGCCcucGC-GGUUUGCu -3' miRNA: 3'- -GGUCGuCCUaa---GGCGG---CGaCUAGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 21440 | 0.68 | 0.513786 |
Target: 5'- gCCAGguGGugggggCCGCCGCgaagGcgUUGUu -3' miRNA: 3'- -GGUCguCCuaa---GGCGGCGa---CuaGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 24577 | 0.73 | 0.242365 |
Target: 5'- aCCGGCGacGGuguugCCGUCGCUGAUCaaUGCc -3' miRNA: 3'- -GGUCGU--CCuaa--GGCGGCGACUAG--ACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 24606 | 1.14 | 0.000289 |
Target: 5'- uCCAGCAGGAUUCCGCCGCUGAUCUGCa -3' miRNA: 3'- -GGUCGUCCUAAGGCGGCGACUAGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 25970 | 0.66 | 0.60251 |
Target: 5'- gCCAgGCuGGugaccaCGUCGgUGAUCUGCg -3' miRNA: 3'- -GGU-CGuCCuaag--GCGGCgACUAGACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 26828 | 0.69 | 0.440805 |
Target: 5'- gCCAGCGGGGcugucUUCgGCCcGUUGggCUGg -3' miRNA: 3'- -GGUCGUCCU-----AAGgCGG-CGACuaGACg -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 28281 | 0.68 | 0.52463 |
Target: 5'- gUCAGUGGGGUgaCCGgCGCUGcgggagCUGCc -3' miRNA: 3'- -GGUCGUCCUAa-GGCgGCGACua----GACG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 28546 | 0.68 | 0.513786 |
Target: 5'- -gGGCGGGGgccgUCCGCCGCgccaccgGGg--GCg -3' miRNA: 3'- ggUCGUCCUa---AGGCGGCGa------CUagaCG- -5' |
|||||||
23045 | 5' | -54.9 | NC_005178.1 | + | 29476 | 0.69 | 0.46108 |
Target: 5'- aCAGCAaucGGAcgcUCCucCCGCUGggCUGCg -3' miRNA: 3'- gGUCGU---CCUa--AGGc-GGCGACuaGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home