miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23045 5' -54.9 NC_005178.1 + 13814 0.75 0.206041
Target:  5'- cCCAGCuugcggGGGAgUUCCGCCGCcaGAUCgagGCc -3'
miRNA:   3'- -GGUCG------UCCU-AAGGCGGCGa-CUAGa--CG- -5'
23045 5' -54.9 NC_005178.1 + 13560 0.67 0.579988
Target:  5'- gCGGCGGGucagCGUCGuCUGAUCcGCg -3'
miRNA:   3'- gGUCGUCCuaagGCGGC-GACUAGaCG- -5'
23045 5' -54.9 NC_005178.1 + 36341 0.67 0.557648
Target:  5'- aCAGCGGacGAUucgCCGgcaucaucaauCCGCUGAuUCUGCg -3'
miRNA:   3'- gGUCGUC--CUAa--GGC-----------GGCGACU-AGACG- -5'
23045 5' -54.9 NC_005178.1 + 20793 0.68 0.52463
Target:  5'- aCCAGCuGGAcgaggCCGCCcucGC-GGUUUGCu -3'
miRNA:   3'- -GGUCGuCCUaa---GGCGG---CGaCUAGACG- -5'
23045 5' -54.9 NC_005178.1 + 4949 0.68 0.52463
Target:  5'- gCCAGCGG----CCGcCCGCUGAUCa-- -3'
miRNA:   3'- -GGUCGUCcuaaGGC-GGCGACUAGacg -5'
23045 5' -54.9 NC_005178.1 + 28281 0.68 0.52463
Target:  5'- gUCAGUGGGGUgaCCGgCGCUGcgggagCUGCc -3'
miRNA:   3'- -GGUCGUCCUAa-GGCgGCGACua----GACG- -5'
23045 5' -54.9 NC_005178.1 + 28546 0.68 0.513786
Target:  5'- -gGGCGGGGgccgUCCGCCGCgccaccgGGg--GCg -3'
miRNA:   3'- ggUCGUCCUa---AGGCGGCGa------CUagaCG- -5'
23045 5' -54.9 NC_005178.1 + 29476 0.69 0.46108
Target:  5'- aCAGCAaucGGAcgcUCCucCCGCUGggCUGCg -3'
miRNA:   3'- gGUCGU---CCUa--AGGc-GGCGACuaGACG- -5'
23045 5' -54.9 NC_005178.1 + 26828 0.69 0.440805
Target:  5'- gCCAGCGGGGcugucUUCgGCCcGUUGggCUGg -3'
miRNA:   3'- -GGUCGUCCU-----AAGgCGG-CGACuaGACg -5'
23045 5' -54.9 NC_005178.1 + 3665 0.7 0.41137
Target:  5'- aCCAGagccuguGGAUUCgCGCCGCcaagGAaCUGCc -3'
miRNA:   3'- -GGUCgu-----CCUAAG-GCGGCGa---CUaGACG- -5'
23045 5' -54.9 NC_005178.1 + 11767 0.73 0.276578
Target:  5'- cCCgAGCcaugGGGGUUCCGCCGCaggccGGcCUGCa -3'
miRNA:   3'- -GG-UCG----UCCUAAGGCGGCGa----CUaGACG- -5'
23045 5' -54.9 NC_005178.1 + 8912 0.72 0.291307
Target:  5'- gCCAGCAGGAUcggcccggcuUCCGUgCGCUGGgggUGUg -3'
miRNA:   3'- -GGUCGUCCUA----------AGGCG-GCGACUag-ACG- -5'
23045 5' -54.9 NC_005178.1 + 4119 0.72 0.306643
Target:  5'- gCCAGCAGGGUgugggUCUacgacggcgaggGCCGCUuccUCUGCa -3'
miRNA:   3'- -GGUCGUCCUA-----AGG------------CGGCGAcu-AGACG- -5'
23045 5' -54.9 NC_005178.1 + 31054 0.71 0.330791
Target:  5'- uCUGGcCAGGcgucgCCGCCGCUGGguuuugCUGCc -3'
miRNA:   3'- -GGUC-GUCCuaa--GGCGGCGACUa-----GACG- -5'
23045 5' -54.9 NC_005178.1 + 34190 0.7 0.383184
Target:  5'- gCUGGCGGG---CCGCUGCUGAcaagCUGUa -3'
miRNA:   3'- -GGUCGUCCuaaGGCGGCGACUa---GACG- -5'
23045 5' -54.9 NC_005178.1 + 16045 0.7 0.392436
Target:  5'- gUAGCGGGcuGUUCCGCgUGCUGGcCUGg -3'
miRNA:   3'- gGUCGUCC--UAAGGCG-GCGACUaGACg -5'
23045 5' -54.9 NC_005178.1 + 16436 0.66 0.62514
Target:  5'- cCCAgggcGUAGGcg-CCGCCGCccgacucgcUGGUCUGg -3'
miRNA:   3'- -GGU----CGUCCuaaGGCGGCG---------ACUAGACg -5'
23045 5' -54.9 NC_005178.1 + 24577 0.73 0.242365
Target:  5'- aCCGGCGacGGuguugCCGUCGCUGAUCaaUGCc -3'
miRNA:   3'- -GGUCGU--CCuaa--GGCGGCGACUAG--ACG- -5'
23045 5' -54.9 NC_005178.1 + 34395 0.71 0.322589
Target:  5'- uCCcGCAGGAg-CCGgaUGCUGAUCUGUc -3'
miRNA:   3'- -GGuCGUCCUaaGGCg-GCGACUAGACG- -5'
23045 5' -54.9 NC_005178.1 + 32970 0.7 0.374078
Target:  5'- gCCGGCGaccacgccgcuGGAgaucacCCaGCCGCUGAugcUCUGCg -3'
miRNA:   3'- -GGUCGU-----------CCUaa----GG-CGGCGACU---AGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.