Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23046 | 3' | -60.6 | NC_005178.1 | + | 4035 | 0.66 | 0.35946 |
Target: 5'- uCGGaacaGCGGCCGGG-CCUCGUCgUCGGu -3' miRNA: 3'- -GCC----UGUUGGUCCaGGAGCGGgGGCUg -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 20255 | 0.66 | 0.35946 |
Target: 5'- gCGGccGCGACCuuuGG-CCUCuacaaCCCCGACg -3' miRNA: 3'- -GCC--UGUUGGu--CCaGGAGcg---GGGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 34164 | 0.66 | 0.351102 |
Target: 5'- aGGAUGugcGCCGGGUUCaUCGCCUugauCUGACc -3' miRNA: 3'- gCCUGU---UGGUCCAGG-AGCGGG----GGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 32701 | 0.66 | 0.351102 |
Target: 5'- -aGACGACCAGGUCgaCGgcaCCgCUCGGCg -3' miRNA: 3'- gcCUGUUGGUCCAGgaGC---GG-GGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 5499 | 0.66 | 0.346154 |
Target: 5'- cCGGAUuacuuCCcacaucugcuggcggGGGcUCUUGCCCCCGACc -3' miRNA: 3'- -GCCUGuu---GG---------------UCCaGGAGCGGGGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 6948 | 0.66 | 0.342883 |
Target: 5'- uGGACGAagaCGGGcggaCgCUCGCCCCaggcCGACa -3' miRNA: 3'- gCCUGUUg--GUCCa---G-GAGCGGGG----GCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 36531 | 0.66 | 0.334803 |
Target: 5'- gGGACGGCCGagcGGUagCCUUGCCCgCuACg -3' miRNA: 3'- gCCUGUUGGU---CCA--GGAGCGGGgGcUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 31239 | 0.67 | 0.311406 |
Target: 5'- cCGGugAugaccaggACCAGGUCCggcUCGCCCaggagccuCCaGACg -3' miRNA: 3'- -GCCugU--------UGGUCCAGG---AGCGGG--------GG-CUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 33077 | 0.67 | 0.311406 |
Target: 5'- aGGAUguaaaGAUCGGGUCCggcgUGCCgCUCGAUg -3' miRNA: 3'- gCCUG-----UUGGUCCAGGa---GCGG-GGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 16037 | 0.67 | 0.303888 |
Target: 5'- cCGaACGGCUGGaGUaCCUCGCCCgCGAUg -3' miRNA: 3'- -GCcUGUUGGUC-CA-GGAGCGGGgGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 21597 | 0.67 | 0.303888 |
Target: 5'- aCGGugG-CCucgaaGUCCUCGUUCUCGACa -3' miRNA: 3'- -GCCugUuGGuc---CAGGAGCGGGGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 21188 | 0.67 | 0.303888 |
Target: 5'- uGGACGACCAGa-CCgUCGCCgCCacgGACg -3' miRNA: 3'- gCCUGUUGGUCcaGG-AGCGG-GGg--CUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 31169 | 0.67 | 0.29651 |
Target: 5'- uGGGCGagccggACCuGGUCCUgGUCaucaCCGGCa -3' miRNA: 3'- gCCUGU------UGGuCCAGGAgCGGg---GGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 28638 | 0.67 | 0.282174 |
Target: 5'- gGGAUGGCgGGGaaugCCggcgaCGCCCCCGGu -3' miRNA: 3'- gCCUGUUGgUCCa---GGa----GCGGGGGCUg -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 18336 | 0.67 | 0.282174 |
Target: 5'- uGGugGACCgcgAGGUCCaggaGCgCCUGGCg -3' miRNA: 3'- gCCugUUGG---UCCAGGag--CGgGGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 33912 | 0.68 | 0.273154 |
Target: 5'- aGGACAuCCAGcGUCCcaucgagcccaccuUCGCCCuuGuCa -3' miRNA: 3'- gCCUGUuGGUC-CAGG--------------AGCGGGggCuG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 16684 | 0.68 | 0.248112 |
Target: 5'- uGGGCGAUCAGG-CCggcgcaggcaUCGCCCaacugagCCGGCg -3' miRNA: 3'- gCCUGUUGGUCCaGG----------AGCGGG-------GGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 18722 | 0.69 | 0.236928 |
Target: 5'- aCGGGCGcGCCGGGauagucaccuuacggCCUCGCCcagCCUGACc -3' miRNA: 3'- -GCCUGU-UGGUCCa--------------GGAGCGG---GGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 28952 | 0.69 | 0.230304 |
Target: 5'- aCGGcCAucgccgugcGCCAGGUgacCCUgcgCGCCCCUGGCc -3' miRNA: 3'- -GCCuGU---------UGGUCCA---GGA---GCGGGGGCUG- -5' |
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23046 | 3' | -60.6 | NC_005178.1 | + | 17323 | 0.69 | 0.230304 |
Target: 5'- cCGGACGGCgGGG-CCgaggUCGCCCagcuCGGCa -3' miRNA: 3'- -GCCUGUUGgUCCaGG----AGCGGGg---GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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