miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23048 3' -53.2 NC_005178.1 + 37456 0.66 0.733811
Target:  5'- gGAAGCgAUGGa-GGCCGaguUCAGCc -3'
miRNA:   3'- gCUUCGgUACCaaCUGGCgguAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 27662 0.66 0.689028
Target:  5'- cCGcuGCCGUGGgcaUGGgCGCgCAaCAGCg -3'
miRNA:   3'- -GCuuCGGUACCa--ACUgGCG-GUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 22262 0.66 0.689028
Target:  5'- cCGAccGCCA-GGcUGGcCCGCCAggCGGCg -3'
miRNA:   3'- -GCUu-CGGUaCCaACU-GGCGGUa-GUCG- -5'
23048 3' -53.2 NC_005178.1 + 12869 0.66 0.699217
Target:  5'- gGAAGCCGaGGggGACgacugggacaaggCGCaAUCGGCg -3'
miRNA:   3'- gCUUCGGUaCCaaCUG-------------GCGgUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25808 0.66 0.700345
Target:  5'- aGGAGCaacGG--GACCGCCugcUCGGCa -3'
miRNA:   3'- gCUUCGguaCCaaCUGGCGGu--AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 35398 0.66 0.72275
Target:  5'- gCGAGGgCCAacUGGccccggcgcUGGCCGCCAccgaCAGCc -3'
miRNA:   3'- -GCUUC-GGU--ACCa--------ACUGGCGGUa---GUCG- -5'
23048 3' -53.2 NC_005178.1 + 11821 0.66 0.72275
Target:  5'- --uGGCCGcccUGG-UGACCGCgAucauUCGGCa -3'
miRNA:   3'- gcuUCGGU---ACCaACUGGCGgU----AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 14461 0.66 0.72275
Target:  5'- aCGAcaCCAUGGacgUGAUCaUCAUCGGCa -3'
miRNA:   3'- -GCUucGGUACCa--ACUGGcGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 13376 0.66 0.733811
Target:  5'- gGAGG--AUGGUcuUGACCGCUuucugauagcaGUCGGCa -3'
miRNA:   3'- gCUUCggUACCA--ACUGGCGG-----------UAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 24866 0.67 0.654769
Target:  5'- gGAAGCuCGUucugccGUUGAUUGCCGUgAGCu -3'
miRNA:   3'- gCUUCG-GUAc-----CAACUGGCGGUAgUCG- -5'
23048 3' -53.2 NC_005178.1 + 26354 0.68 0.605381
Target:  5'- uGAGGCCGUGGcgGuacugucggaaaucACCGCgAcCGGCa -3'
miRNA:   3'- gCUUCGGUACCaaC--------------UGGCGgUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 21009 0.68 0.585936
Target:  5'- ---cGCCGUGGgcGgcagcACCGCCAcCGGCc -3'
miRNA:   3'- gcuuCGGUACCaaC-----UGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25839 0.75 0.242329
Target:  5'- uGAcGCCAUGGccgUGGCCGgCAuuUCGGCa -3'
miRNA:   3'- gCUuCGGUACCa--ACUGGCgGU--AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25131 0.72 0.36713
Target:  5'- gCGAAGCCGaGGcagaaaagGGCCGCCAgcaAGCc -3'
miRNA:   3'- -GCUUCGGUaCCaa------CUGGCGGUag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 14944 0.72 0.379945
Target:  5'- gGGAGacaggcguccuggaCGUGGUcgGGCCGCCAUCcGCa -3'
miRNA:   3'- gCUUCg-------------GUACCAa-CUGGCGGUAGuCG- -5'
23048 3' -53.2 NC_005178.1 + 11769 0.71 0.4241
Target:  5'- -cGAGCCAUGGggGuuCCGCCG-CAGg -3'
miRNA:   3'- gcUUCGGUACCaaCu-GGCGGUaGUCg -5'
23048 3' -53.2 NC_005178.1 + 25940 0.71 0.434098
Target:  5'- gGAuGCCAcgUGGaUGGuuGCCAUcCAGCa -3'
miRNA:   3'- gCUuCGGU--ACCaACUggCGGUA-GUCG- -5'
23048 3' -53.2 NC_005178.1 + 20362 0.7 0.496779
Target:  5'- aGAGGCCAUugcGGcccUGACCGCCcugaAGCc -3'
miRNA:   3'- gCUUCGGUA---CCa--ACUGGCGGuag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 17616 0.69 0.507629
Target:  5'- gCGucGCCGUGGUcUGACgGUCGagucCAGCg -3'
miRNA:   3'- -GCuuCGGUACCA-ACUGgCGGUa---GUCG- -5'
23048 3' -53.2 NC_005178.1 + 4929 0.68 0.563219
Target:  5'- aGAucGCCGaGGaacUGGCCGCCAgCGGCc -3'
miRNA:   3'- gCUu-CGGUaCCa--ACUGGCGGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.