miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23048 3' -53.2 NC_005178.1 + 4929 0.68 0.563219
Target:  5'- aGAucGCCGaGGaacUGGCCGCCAgCGGCc -3'
miRNA:   3'- gCUu-CGGUaCCa--ACUGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 5729 0.66 0.716065
Target:  5'- ---cGCCucgGUGGUguaucccugcugggaUGGCuUGCCAUCGGCg -3'
miRNA:   3'- gcuuCGG---UACCA---------------ACUG-GCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 7806 0.67 0.654769
Target:  5'- ---cGCCcUGGagGACCGCCA--GGCg -3'
miRNA:   3'- gcuuCGGuACCaaCUGGCGGUagUCG- -5'
23048 3' -53.2 NC_005178.1 + 9119 0.7 0.46489
Target:  5'- gGAGGCCGg---UGACCGCgAgcgCGGCg -3'
miRNA:   3'- gCUUCGGUaccaACUGGCGgUa--GUCG- -5'
23048 3' -53.2 NC_005178.1 + 9544 0.72 0.376253
Target:  5'- ---cGUCAUGGgUGGCUGCuCAUCAGUa -3'
miRNA:   3'- gcuuCGGUACCaACUGGCG-GUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 9742 0.72 0.385527
Target:  5'- aGGAGCaa-GG-UGACCGCC-UCGGCc -3'
miRNA:   3'- gCUUCGguaCCaACUGGCGGuAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 11214 0.66 0.72275
Target:  5'- gGAAGCCcaGGgcGGCgGCCAg-GGCg -3'
miRNA:   3'- gCUUCGGuaCCaaCUGgCGGUagUCG- -5'
23048 3' -53.2 NC_005178.1 + 11562 0.69 0.518577
Target:  5'- gCGGAuGCCGcgaGGUUGAaggGCCAUCAGUu -3'
miRNA:   3'- -GCUU-CGGUa--CCAACUgg-CGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 11769 0.71 0.4241
Target:  5'- -cGAGCCAUGGggGuuCCGCCG-CAGg -3'
miRNA:   3'- gcUUCGGUACCaaCu-GGCGGUaGUCg -5'
23048 3' -53.2 NC_005178.1 + 11821 0.66 0.72275
Target:  5'- --uGGCCGcccUGG-UGACCGCgAucauUCGGCa -3'
miRNA:   3'- gcuUCGGU---ACCaACUGGCGgU----AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 12260 0.68 0.585936
Target:  5'- -aGAGCCGcgcUGGUguccugGACCGUCuUCAGUu -3'
miRNA:   3'- gcUUCGGU---ACCAa-----CUGGCGGuAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 12869 0.66 0.699217
Target:  5'- gGAAGCCGaGGggGACgacugggacaaggCGCaAUCGGCg -3'
miRNA:   3'- gCUUCGGUaCCaaCUG-------------GCGgUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 13376 0.66 0.733811
Target:  5'- gGAGG--AUGGUcuUGACCGCUuucugauagcaGUCGGCa -3'
miRNA:   3'- gCUUCggUACCA--ACUGGCGG-----------UAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 14461 0.66 0.72275
Target:  5'- aCGAcaCCAUGGacgUGAUCaUCAUCGGCa -3'
miRNA:   3'- -GCUucGGUACCa--ACUGGcGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 14944 0.72 0.379945
Target:  5'- gGGAGacaggcguccuggaCGUGGUcgGGCCGCCAUCcGCa -3'
miRNA:   3'- gCUUCg-------------GUACCAa-CUGGCGGUAGuCG- -5'
23048 3' -53.2 NC_005178.1 + 16253 0.7 0.496779
Target:  5'- cCGAGGCC--GGUc-ACCGCUcgCAGCa -3'
miRNA:   3'- -GCUUCGGuaCCAacUGGCGGuaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 16526 0.66 0.71159
Target:  5'- aGggGCCAgaGUaGAUCGCgAcUCAGCg -3'
miRNA:   3'- gCuuCGGUacCAaCUGGCGgU-AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 17088 0.72 0.376253
Target:  5'- aGAucGGCCucGGUUGGCguUGCCAUCAGUc -3'
miRNA:   3'- gCU--UCGGuaCCAACUG--GCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 17238 0.67 0.677651
Target:  5'- uGGAGCaCAUccaGGcgugacgccUUGGCCaCCGUCAGCg -3'
miRNA:   3'- gCUUCG-GUA---CC---------AACUGGcGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 17616 0.69 0.507629
Target:  5'- gCGucGCCGUGGUcUGACgGUCGagucCAGCg -3'
miRNA:   3'- -GCuuCGGUACCA-ACUGgCGGUa---GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.