miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23048 3' -53.2 NC_005178.1 + 19810 0.66 0.72275
Target:  5'- uGccGCCAUGGUggcGACgGUCGagcgCGGCg -3'
miRNA:   3'- gCuuCGGUACCAa--CUGgCGGUa---GUCG- -5'
23048 3' -53.2 NC_005178.1 + 20313 0.68 0.597363
Target:  5'- aGAGGCCAaaGGUcgcGGCCGC--UCGGCg -3'
miRNA:   3'- gCUUCGGUa-CCAa--CUGGCGguAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 20362 0.7 0.496779
Target:  5'- aGAGGCCAUugcGGcccUGACCGCCcugaAGCc -3'
miRNA:   3'- gCUUCGGUA---CCa--ACUGGCGGuag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 21009 0.68 0.585936
Target:  5'- ---cGCCGUGGgcGgcagcACCGCCAcCGGCc -3'
miRNA:   3'- gcuuCGGUACCaaC-----UGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 21012 0.71 0.414241
Target:  5'- gCGAAGaCC-UGGacgUUGGCCGCUAcCGGCa -3'
miRNA:   3'- -GCUUC-GGuACC---AACUGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 21450 0.69 0.540743
Target:  5'- gCGAucuucuGCCAggUGGUgggGGCCGCCGcgaaGGCg -3'
miRNA:   3'- -GCUu-----CGGU--ACCAa--CUGGCGGUag--UCG- -5'
23048 3' -53.2 NC_005178.1 + 22262 0.66 0.689028
Target:  5'- cCGAccGCCA-GGcUGGcCCGCCAggCGGCg -3'
miRNA:   3'- -GCUu-CGGUaCCaACU-GGCGGUa-GUCG- -5'
23048 3' -53.2 NC_005178.1 + 24396 0.67 0.666228
Target:  5'- -uAGGCCGcuuugaacggcUGGgucggGGCCGgCGUCGGCa -3'
miRNA:   3'- gcUUCGGU-----------ACCaa---CUGGCgGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 24866 0.67 0.654769
Target:  5'- gGAAGCuCGUucugccGUUGAUUGCCGUgAGCu -3'
miRNA:   3'- gCUUCG-GUAc-----CAACUGGCGGUAgUCG- -5'
23048 3' -53.2 NC_005178.1 + 25131 0.72 0.36713
Target:  5'- gCGAAGCCGaGGcagaaaagGGCCGCCAgcaAGCc -3'
miRNA:   3'- -GCUUCGGUaCCaa------CUGGCGGUag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 25234 1.12 0.000589
Target:  5'- gCGAAGCCAUGGUUGACCGCCAUCAGCu -3'
miRNA:   3'- -GCUUCGGUACCAACUGGCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25808 0.66 0.700345
Target:  5'- aGGAGCaacGG--GACCGCCugcUCGGCa -3'
miRNA:   3'- gCUUCGguaCCaaCUGGCGGu--AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25839 0.75 0.242329
Target:  5'- uGAcGCCAUGGccgUGGCCGgCAuuUCGGCa -3'
miRNA:   3'- gCUuCGGUACCa--ACUGGCgGU--AGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25940 0.71 0.434098
Target:  5'- gGAuGCCAcgUGGaUGGuuGCCAUcCAGCa -3'
miRNA:   3'- gCUuCGGU--ACCaACUggCGGUA-GUCG- -5'
23048 3' -53.2 NC_005178.1 + 26354 0.68 0.605381
Target:  5'- uGAGGCCGUGGcgGuacugucggaaaucACCGCgAcCGGCa -3'
miRNA:   3'- gCUUCGGUACCaaC--------------UGGCGgUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 27662 0.66 0.689028
Target:  5'- cCGcuGCCGUGGgcaUGGgCGCgCAaCAGCg -3'
miRNA:   3'- -GCuuCGGUACCa--ACUgGCG-GUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 28205 0.71 0.444232
Target:  5'- cCGAccgucAGCCccUGGgc-GCCGCCAUCGGUg -3'
miRNA:   3'- -GCU-----UCGGu-ACCaacUGGCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 31571 0.77 0.188997
Target:  5'- uCGAGGUCAaGGcagUGACCGCCGcCGGCc -3'
miRNA:   3'- -GCUUCGGUaCCa--ACUGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 33002 0.68 0.608822
Target:  5'- aCGuAGCCcccGGUaaACCaGCCAUCGGCa -3'
miRNA:   3'- -GCuUCGGua-CCAacUGG-CGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 35398 0.66 0.72275
Target:  5'- gCGAGGgCCAacUGGccccggcgcUGGCCGCCAccgaCAGCc -3'
miRNA:   3'- -GCUUC-GGU--ACCa--------ACUGGCGGUa---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.