miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23048 3' -53.2 NC_005178.1 + 12260 0.68 0.585936
Target:  5'- -aGAGCCGcgcUGGUguccugGACCGUCuUCAGUu -3'
miRNA:   3'- gcUUCGGU---ACCAa-----CUGGCGGuAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 35455 0.68 0.584796
Target:  5'- cCGggGCCA--GUUGGCCcucGCUgguguucGUCAGCa -3'
miRNA:   3'- -GCuuCGGUacCAACUGG---CGG-------UAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 21009 0.68 0.585936
Target:  5'- ---cGCCGUGGgcGgcagcACCGCCAcCGGCc -3'
miRNA:   3'- gcuuCGGUACCaaC-----UGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 4929 0.68 0.563219
Target:  5'- aGAucGCCGaGGaacUGGCCGCCAgCGGCc -3'
miRNA:   3'- gCUu-CGGUaCCa--ACUGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 11562 0.69 0.518577
Target:  5'- gCGGAuGCCGcgaGGUUGAaggGCCAUCAGUu -3'
miRNA:   3'- -GCUU-CGGUa--CCAACUgg-CGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 21450 0.69 0.540743
Target:  5'- gCGAucuucuGCCAggUGGUgggGGCCGCCGcgaaGGCg -3'
miRNA:   3'- -GCUu-----CGGU--ACCAa--CUGGCGGUag--UCG- -5'
23048 3' -53.2 NC_005178.1 + 17616 0.69 0.507629
Target:  5'- gCGucGCCGUGGUcUGACgGUCGagucCAGCg -3'
miRNA:   3'- -GCuuCGGUACCA-ACUGgCGGUa---GUCG- -5'
23048 3' -53.2 NC_005178.1 + 9119 0.7 0.46489
Target:  5'- gGAGGCCGg---UGACCGCgAgcgCGGCg -3'
miRNA:   3'- gCUUCGGUaccaACUGGCGgUa--GUCG- -5'
23048 3' -53.2 NC_005178.1 + 16253 0.7 0.496779
Target:  5'- cCGAGGCC--GGUc-ACCGCUcgCAGCa -3'
miRNA:   3'- -GCUUCGGuaCCAacUGGCGGuaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 20362 0.7 0.496779
Target:  5'- aGAGGCCAUugcGGcccUGACCGCCcugaAGCc -3'
miRNA:   3'- gCUUCGGUA---CCa--ACUGGCGGuag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 21012 0.71 0.414241
Target:  5'- gCGAAGaCC-UGGacgUUGGCCGCUAcCGGCa -3'
miRNA:   3'- -GCUUC-GGuACC---AACUGGCGGUaGUCG- -5'
23048 3' -53.2 NC_005178.1 + 28205 0.71 0.444232
Target:  5'- cCGAccgucAGCCccUGGgc-GCCGCCAUCGGUg -3'
miRNA:   3'- -GCU-----UCGGu-ACCaacUGGCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 11769 0.71 0.4241
Target:  5'- -cGAGCCAUGGggGuuCCGCCG-CAGg -3'
miRNA:   3'- gcUUCGGUACCaaCu-GGCGGUaGUCg -5'
23048 3' -53.2 NC_005178.1 + 25940 0.71 0.434098
Target:  5'- gGAuGCCAcgUGGaUGGuuGCCAUcCAGCa -3'
miRNA:   3'- gCUuCGGU--ACCaACUggCGGUA-GUCG- -5'
23048 3' -53.2 NC_005178.1 + 14944 0.72 0.379945
Target:  5'- gGGAGacaggcguccuggaCGUGGUcgGGCCGCCAUCcGCa -3'
miRNA:   3'- gCUUCg-------------GUACCAa-CUGGCGGUAGuCG- -5'
23048 3' -53.2 NC_005178.1 + 25131 0.72 0.36713
Target:  5'- gCGAAGCCGaGGcagaaaagGGCCGCCAgcaAGCc -3'
miRNA:   3'- -GCUUCGGUaCCaa------CUGGCGGUag-UCG- -5'
23048 3' -53.2 NC_005178.1 + 17088 0.72 0.376253
Target:  5'- aGAucGGCCucGGUUGGCguUGCCAUCAGUc -3'
miRNA:   3'- gCU--UCGGuaCCAACUG--GCGGUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 9742 0.72 0.385527
Target:  5'- aGGAGCaa-GG-UGACCGCC-UCGGCc -3'
miRNA:   3'- gCUUCGguaCCaACUGGCGGuAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 9544 0.72 0.376253
Target:  5'- ---cGUCAUGGgUGGCUGCuCAUCAGUa -3'
miRNA:   3'- gcuuCGGUACCaACUGGCG-GUAGUCG- -5'
23048 3' -53.2 NC_005178.1 + 25839 0.75 0.242329
Target:  5'- uGAcGCCAUGGccgUGGCCGgCAuuUCGGCa -3'
miRNA:   3'- gCUuCGGUACCa--ACUGGCgGU--AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.