miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 5' -58.2 NC_005178.1 + 25941 0.67 0.360347
Target:  5'- ----cGCCGGCaacugccgCAUGGCC-UGGCGg- -3'
miRNA:   3'- cuuuaCGGCCG--------GUGCCGGuACCGCag -5'
23049 5' -58.2 NC_005178.1 + 32295 0.67 0.377184
Target:  5'- ----gGUCGGCUcgaccagGCGGCCcagggcGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCGG-------UGCCGGua----CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 14276 0.67 0.381701
Target:  5'- ---uUGCCGGCgcccugggggaagucCAUGGCCA-GGCG-Cg -3'
miRNA:   3'- cuuuACGGCCG---------------GUGCCGGUaCCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 21281 0.66 0.395469
Target:  5'- ----gGCCGGCCggggaGCGGguuucggugccguCCGUGGCGg- -3'
miRNA:   3'- cuuuaCGGCCGG-----UGCC-------------GGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 8920 0.66 0.396399
Target:  5'- ----aGCCcaGGUuuCGCGGUCgGUGGCGUCg -3'
miRNA:   3'- cuuuaCGG--CCG--GUGCCGG-UACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 5917 0.66 0.396399
Target:  5'- cGAggGCCGGUguaGCGGCCuggcuugagGGCGUa -3'
miRNA:   3'- cUUuaCGGCCGg--UGCCGGua-------CCGCAg -5'
23049 5' -58.2 NC_005178.1 + 25698 0.66 0.405767
Target:  5'- ---cUGCCGGUCGaacuCGGCgGUGGCu-- -3'
miRNA:   3'- cuuuACGGCCGGU----GCCGgUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 22910 0.66 0.405767
Target:  5'- ----cGCCGGaUCgAUGGUCGUGGCGg- -3'
miRNA:   3'- cuuuaCGGCC-GG-UGCCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 34738 0.66 0.415274
Target:  5'- gGAAcgGCUGGCCAggguucaGGCUAcgGGCG-Cg -3'
miRNA:   3'- -CUUuaCGGCCGGUg------CCGGUa-CCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 4492 0.66 0.424917
Target:  5'- -cGGUGgUGGCUugGGUgGUGGCugcgGUCg -3'
miRNA:   3'- cuUUACgGCCGGugCCGgUACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 3946 0.66 0.434692
Target:  5'- --uGUGgCGGCgGCGGCC--GGUGUUc -3'
miRNA:   3'- cuuUACgGCCGgUGCCGGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 28771 0.66 0.434692
Target:  5'- ---uUGCCGGCCcacauguCGGCCGccaucUGGUcgggGUCu -3'
miRNA:   3'- cuuuACGGCCGGu------GCCGGU-----ACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 33617 0.68 0.326647
Target:  5'- -cGAUGCCGuccuggagaaaaGCCAUccaauuuaGGCCAUGGCGc- -3'
miRNA:   3'- cuUUACGGC------------CGGUG--------CCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 24386 0.68 0.302942
Target:  5'- uGAAcgGCUgGGUCGgGGCC--GGCGUCg -3'
miRNA:   3'- -CUUuaCGG-CCGGUgCCGGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 3428 0.69 0.287887
Target:  5'- gGAAggGCCGGCCGugcaucgggugcUGGaCCucGGCGUCg -3'
miRNA:   3'- -CUUuaCGGCCGGU------------GCC-GGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 4718 0.69 0.280584
Target:  5'- -cGAUGUCGGCCAugccauUGGCCAguugGGUGg- -3'
miRNA:   3'- cuUUACGGCCGGU------GCCGGUa---CCGCag -5'
23049 5' -58.2 NC_005178.1 + 23511 0.69 0.27272
Target:  5'- ----cGCCGGgCGCccuGGCCGUcgcccugGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCgGUG---CCGGUA-------CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 3823 0.69 0.259556
Target:  5'- -uGGUGCCgcccuuGGCgAUGGCCcgGcGCGUCa -3'
miRNA:   3'- cuUUACGG------CCGgUGCCGGuaC-CGCAG- -5'
23049 5' -58.2 NC_005178.1 + 18453 0.7 0.239832
Target:  5'- -cGAUGCCGcGCaucaGCGGCag-GGUGUCg -3'
miRNA:   3'- cuUUACGGC-CGg---UGCCGguaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 17126 0.7 0.22739
Target:  5'- -cAAUGgCGGCCucCGGCCGcaUGGCGa- -3'
miRNA:   3'- cuUUACgGCCGGu-GCCGGU--ACCGCag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.