miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 5' -58.2 NC_005178.1 + 28261 0.75 0.101002
Target:  5'- ----cGCUGGCCGCcGCCaAUGGUGUCa -3'
miRNA:   3'- cuuuaCGGCCGGUGcCGG-UACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 9656 0.66 0.438638
Target:  5'- ---cUGCgCGGCCGguggcuucgccgagcCGGCCGaGGCGgUCa -3'
miRNA:   3'- cuuuACG-GCCGGU---------------GCCGGUaCCGC-AG- -5'
23049 5' -58.2 NC_005178.1 + 6871 0.66 0.434692
Target:  5'- cGAucUGUCGGCCugGGgCGa-GCGUCc -3'
miRNA:   3'- -CUuuACGGCCGGugCCgGUacCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 7068 0.66 0.434692
Target:  5'- uGAGUGcCCGGcCCugGGCgA-GGCGg- -3'
miRNA:   3'- cUUUAC-GGCC-GGugCCGgUaCCGCag -5'
23049 5' -58.2 NC_005178.1 + 31500 0.66 0.409554
Target:  5'- ----gGCCGGCCucgacuuccgcgacgGCGGUC-UGGCGa- -3'
miRNA:   3'- cuuuaCGGCCGG---------------UGCCGGuACCGCag -5'
23049 5' -58.2 NC_005178.1 + 35701 0.66 0.405767
Target:  5'- ----cGCUGGCCGaGGaCAUGGCGg- -3'
miRNA:   3'- cuuuaCGGCCGGUgCCgGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 37048 0.67 0.38717
Target:  5'- aGAGuggGCCGGCUcgcuggacgagGCGGCagcacucgcUGGCGUCc -3'
miRNA:   3'- -CUUua-CGGCCGG-----------UGCCGgu-------ACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 23445 0.67 0.378084
Target:  5'- ----cGCCcagGGCgACGGCCAgGGCGcCc -3'
miRNA:   3'- cuuuaCGG---CCGgUGCCGGUaCCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 23247 0.67 0.378084
Target:  5'- cGAGGUGCCcGGCCuucaggACGuuUcgGGCGUCc -3'
miRNA:   3'- -CUUUACGG-CCGG------UGCcgGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 31915 0.67 0.360347
Target:  5'- ---cUGCCGGUCAuCGGCCAUcgcugaucGGCa-- -3'
miRNA:   3'- cuuuACGGCCGGU-GCCGGUA--------CCGcag -5'
23049 5' -58.2 NC_005178.1 + 15828 0.71 0.198663
Target:  5'- ----cGUCGGCCACGGCUAUaGCGc- -3'
miRNA:   3'- cuuuaCGGCCGGUGCCGGUAcCGCag -5'
23049 5' -58.2 NC_005178.1 + 10268 0.7 0.22739
Target:  5'- ---cUGCCGGCCACGcUgGUGGUaGUCg -3'
miRNA:   3'- cuuuACGGCCGGUGCcGgUACCG-CAG- -5'
23049 5' -58.2 NC_005178.1 + 22165 0.69 0.259556
Target:  5'- ---cUGCCGGUUACGGCUucUGGCa-- -3'
miRNA:   3'- cuuuACGGCCGGUGCCGGu-ACCGcag -5'
23049 5' -58.2 NC_005178.1 + 16201 0.69 0.259556
Target:  5'- -cGGUGaCCGGCCuCGGCCAUGccgcaGCGg- -3'
miRNA:   3'- cuUUAC-GGCCGGuGCCGGUAC-----CGCag -5'
23049 5' -58.2 NC_005178.1 + 21237 0.69 0.259556
Target:  5'- ----gGCCGGCCGCa-UCAUcGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCGGUGccGGUA-CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 11747 0.68 0.302942
Target:  5'- ----cGCauauGCCACGGCCGUGGCc-- -3'
miRNA:   3'- cuuuaCGgc--CGGUGCCGGUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 26113 0.68 0.310694
Target:  5'- ----cGUCGGCCaacaacgccaagACGGCUAUGGUGg- -3'
miRNA:   3'- cuuuaCGGCCGG------------UGCCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 28771 0.66 0.434692
Target:  5'- ---uUGCCGGCCcacauguCGGCCGccaucUGGUcgggGUCu -3'
miRNA:   3'- cuuuACGGCCGGu------GCCGGU-----ACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 11810 0.76 0.082402
Target:  5'- ----gGCUcgGGCCACGGCCGUGGCa-- -3'
miRNA:   3'- cuuuaCGG--CCGGUGCCGGUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 10064 0.73 0.142353
Target:  5'- cGGuuUGCCGGUUuuGCGGCacuuuUGGCGUCg -3'
miRNA:   3'- -CUuuACGGCCGG--UGCCGgu---ACCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.