Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23049 | 5' | -58.2 | NC_005178.1 | + | 35866 | 0.72 | 0.16379 |
Target: 5'- ----aGCCGGaaaCCGaGGCCGUGGCGUUc -3' miRNA: 3'- cuuuaCGGCC---GGUgCCGGUACCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 11215 | 0.68 | 0.334848 |
Target: 5'- aGGAA-GCCcagGGCgGCGGCCAgGGCGcCc -3' miRNA: 3'- -CUUUaCGG---CCGgUGCCGGUaCCGCaG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 25941 | 0.67 | 0.360347 |
Target: 5'- ----cGCCGGCaacugccgCAUGGCC-UGGCGg- -3' miRNA: 3'- cuuuaCGGCCG--------GUGCCGGuACCGCag -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 28771 | 0.66 | 0.434692 |
Target: 5'- ---uUGCCGGCCcacauguCGGCCGccaucUGGUcgggGUCu -3' miRNA: 3'- cuuuACGGCCGGu------GCCGGU-----ACCG----CAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 17126 | 0.7 | 0.22739 |
Target: 5'- -cAAUGgCGGCCucCGGCCGcaUGGCGa- -3' miRNA: 3'- cuUUACgGCCGGu-GCCGGU--ACCGCag -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 18453 | 0.7 | 0.239832 |
Target: 5'- -cGAUGCCGcGCaucaGCGGCag-GGUGUCg -3' miRNA: 3'- cuUUACGGC-CGg---UGCCGguaCCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 25902 | 1.1 | 0.000224 |
Target: 5'- cGAAAUGCCGGCCACGGCCAUGGCGUCa -3' miRNA: 3'- -CUUUACGGCCGGUGCCGGUACCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 11810 | 0.76 | 0.082402 |
Target: 5'- ----gGCUcgGGCCACGGCCGUGGCa-- -3' miRNA: 3'- cuuuaCGG--CCGGUGCCGGUACCGcag -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 10064 | 0.73 | 0.142353 |
Target: 5'- cGGuuUGCCGGUUuuGCGGCacuuuUGGCGUCg -3' miRNA: 3'- -CUuuACGGCCGG--UGCCGgu---ACCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 20310 | 0.68 | 0.334848 |
Target: 5'- ----gGCCaaaGGUCGCGGCCGcucGGCGUg -3' miRNA: 3'- cuuuaCGG---CCGGUGCCGGUa--CCGCAg -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 3428 | 0.69 | 0.287887 |
Target: 5'- gGAAggGCCGGCCGugcaucgggugcUGGaCCucGGCGUCg -3' miRNA: 3'- -CUUuaCGGCCGGU------------GCC-GGuaCCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 4718 | 0.69 | 0.280584 |
Target: 5'- -cGAUGUCGGCCAugccauUGGCCAguugGGUGg- -3' miRNA: 3'- cuUUACGGCCGGU------GCCGGUa---CCGCag -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 12840 | 0.72 | 0.178007 |
Target: 5'- gGGAcUGCCGGUCgaggacguaggcGCGGCgCAgGGCGUCg -3' miRNA: 3'- -CUUuACGGCCGG------------UGCCG-GUaCCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 24386 | 0.68 | 0.302942 |
Target: 5'- uGAAcgGCUgGGUCGgGGCC--GGCGUCg -3' miRNA: 3'- -CUUuaCGG-CCGGUgCCGGuaCCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 28629 | 0.71 | 0.188086 |
Target: 5'- gGGAAUGCCGGCgACGcCCccgGUGGCG-Cg -3' miRNA: 3'- -CUUUACGGCCGgUGCcGG---UACCGCaG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 23511 | 0.69 | 0.27272 |
Target: 5'- ----cGCCGGgCGCccuGGCCGUcgcccugGGCGUCg -3' miRNA: 3'- cuuuaCGGCCgGUG---CCGGUA-------CCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 33617 | 0.68 | 0.326647 |
Target: 5'- -cGAUGCCGuccuggagaaaaGCCAUccaauuuaGGCCAUGGCGc- -3' miRNA: 3'- cuUUACGGC------------CGGUG--------CCGGUACCGCag -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 37262 | 0.67 | 0.351699 |
Target: 5'- --uGUGCCGGUa---GCgAUGGCGUCa -3' miRNA: 3'- cuuUACGGCCGgugcCGgUACCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 28991 | 0.71 | 0.198663 |
Target: 5'- --cGUGCCGGaCGCGGggAUGGUGUCg -3' miRNA: 3'- cuuUACGGCCgGUGCCggUACCGCAG- -5' |
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23049 | 5' | -58.2 | NC_005178.1 | + | 3823 | 0.69 | 0.259556 |
Target: 5'- -uGGUGCCgcccuuGGCgAUGGCCcgGcGCGUCa -3' miRNA: 3'- cuUUACGG------CCGgUGCCGGuaC-CGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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