miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 5' -58.2 NC_005178.1 + 25902 1.1 0.000224
Target:  5'- cGAAAUGCCGGCCACGGCCAUGGCGUCa -3'
miRNA:   3'- -CUUUACGGCCGGUGCCGGUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 11810 0.76 0.082402
Target:  5'- ----gGCUcgGGCCACGGCCGUGGCa-- -3'
miRNA:   3'- cuuuaCGG--CCGGUGCCGGUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 28261 0.75 0.101002
Target:  5'- ----cGCUGGCCGCcGCCaAUGGUGUCa -3'
miRNA:   3'- cuuuaCGGCCGGUGcCGG-UACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 10064 0.73 0.142353
Target:  5'- cGGuuUGCCGGUUuuGCGGCacuuuUGGCGUCg -3'
miRNA:   3'- -CUuuACGGCCGG--UGCCGgu---ACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 15793 0.73 0.154886
Target:  5'- ----cGUCGGCCuucucuGCGGCCGaGGCGUUg -3'
miRNA:   3'- cuuuaCGGCCGG------UGCCGGUaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 35866 0.72 0.16379
Target:  5'- ----aGCCGGaaaCCGaGGCCGUGGCGUUc -3'
miRNA:   3'- cuuuaCGGCC---GGUgCCGGUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 12840 0.72 0.178007
Target:  5'- gGGAcUGCCGGUCgaggacguaggcGCGGCgCAgGGCGUCg -3'
miRNA:   3'- -CUUuACGGCCGG------------UGCCG-GUaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 28629 0.71 0.188086
Target:  5'- gGGAAUGCCGGCgACGcCCccgGUGGCG-Cg -3'
miRNA:   3'- -CUUUACGGCCGgUGCcGG---UACCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 28991 0.71 0.198663
Target:  5'- --cGUGCCGGaCGCGGggAUGGUGUCg -3'
miRNA:   3'- cuuUACGGCCgGUGCCggUACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 15828 0.71 0.198663
Target:  5'- ----cGUCGGCCACGGCUAUaGCGc- -3'
miRNA:   3'- cuuuaCGGCCGGUGCCGGUAcCGCag -5'
23049 5' -58.2 NC_005178.1 + 10268 0.7 0.22739
Target:  5'- ---cUGCCGGCCACGcUgGUGGUaGUCg -3'
miRNA:   3'- cuuuACGGCCGGUGCcGgUACCG-CAG- -5'
23049 5' -58.2 NC_005178.1 + 17126 0.7 0.22739
Target:  5'- -cAAUGgCGGCCucCGGCCGcaUGGCGa- -3'
miRNA:   3'- cuUUACgGCCGGu-GCCGGU--ACCGCag -5'
23049 5' -58.2 NC_005178.1 + 18453 0.7 0.239832
Target:  5'- -cGAUGCCGcGCaucaGCGGCag-GGUGUCg -3'
miRNA:   3'- cuUUACGGC-CGg---UGCCGguaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 22165 0.69 0.259556
Target:  5'- ---cUGCCGGUUACGGCUucUGGCa-- -3'
miRNA:   3'- cuuuACGGCCGGUGCCGGu-ACCGcag -5'
23049 5' -58.2 NC_005178.1 + 21237 0.69 0.259556
Target:  5'- ----gGCCGGCCGCa-UCAUcGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCGGUGccGGUA-CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 16201 0.69 0.259556
Target:  5'- -cGGUGaCCGGCCuCGGCCAUGccgcaGCGg- -3'
miRNA:   3'- cuUUAC-GGCCGGuGCCGGUAC-----CGCag -5'
23049 5' -58.2 NC_005178.1 + 3823 0.69 0.259556
Target:  5'- -uGGUGCCgcccuuGGCgAUGGCCcgGcGCGUCa -3'
miRNA:   3'- cuUUACGG------CCGgUGCCGGuaC-CGCAG- -5'
23049 5' -58.2 NC_005178.1 + 23511 0.69 0.27272
Target:  5'- ----cGCCGGgCGCccuGGCCGUcgcccugGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCgGUG---CCGGUA-------CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 4718 0.69 0.280584
Target:  5'- -cGAUGUCGGCCAugccauUGGCCAguugGGUGg- -3'
miRNA:   3'- cuUUACGGCCGGU------GCCGGUa---CCGCag -5'
23049 5' -58.2 NC_005178.1 + 3428 0.69 0.287887
Target:  5'- gGAAggGCCGGCCGugcaucgggugcUGGaCCucGGCGUCg -3'
miRNA:   3'- -CUUuaCGGCCGGU------------GCC-GGuaCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.