miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23049 5' -58.2 NC_005178.1 + 9656 0.66 0.438638
Target:  5'- ---cUGCgCGGCCGguggcuucgccgagcCGGCCGaGGCGgUCa -3'
miRNA:   3'- cuuuACG-GCCGGU---------------GCCGGUaCCGC-AG- -5'
23049 5' -58.2 NC_005178.1 + 7068 0.66 0.434692
Target:  5'- uGAGUGcCCGGcCCugGGCgA-GGCGg- -3'
miRNA:   3'- cUUUAC-GGCC-GGugCCGgUaCCGCag -5'
23049 5' -58.2 NC_005178.1 + 3946 0.66 0.434692
Target:  5'- --uGUGgCGGCgGCGGCC--GGUGUUc -3'
miRNA:   3'- cuuUACgGCCGgUGCCGGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 28771 0.66 0.434692
Target:  5'- ---uUGCCGGCCcacauguCGGCCGccaucUGGUcgggGUCu -3'
miRNA:   3'- cuuuACGGCCGGu------GCCGGU-----ACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 6871 0.66 0.434692
Target:  5'- cGAucUGUCGGCCugGGgCGa-GCGUCc -3'
miRNA:   3'- -CUuuACGGCCGGugCCgGUacCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 4492 0.66 0.424917
Target:  5'- -cGGUGgUGGCUugGGUgGUGGCugcgGUCg -3'
miRNA:   3'- cuUUACgGCCGGugCCGgUACCG----CAG- -5'
23049 5' -58.2 NC_005178.1 + 34738 0.66 0.415274
Target:  5'- gGAAcgGCUGGCCAggguucaGGCUAcgGGCG-Cg -3'
miRNA:   3'- -CUUuaCGGCCGGUg------CCGGUa-CCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 31500 0.66 0.409554
Target:  5'- ----gGCCGGCCucgacuuccgcgacgGCGGUC-UGGCGa- -3'
miRNA:   3'- cuuuaCGGCCGG---------------UGCCGGuACCGCag -5'
23049 5' -58.2 NC_005178.1 + 35701 0.66 0.405767
Target:  5'- ----cGCUGGCCGaGGaCAUGGCGg- -3'
miRNA:   3'- cuuuaCGGCCGGUgCCgGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 22910 0.66 0.405767
Target:  5'- ----cGCCGGaUCgAUGGUCGUGGCGg- -3'
miRNA:   3'- cuuuaCGGCC-GG-UGCCGGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 25698 0.66 0.405767
Target:  5'- ---cUGCCGGUCGaacuCGGCgGUGGCu-- -3'
miRNA:   3'- cuuuACGGCCGGU----GCCGgUACCGcag -5'
23049 5' -58.2 NC_005178.1 + 8920 0.66 0.396399
Target:  5'- ----aGCCcaGGUuuCGCGGUCgGUGGCGUCg -3'
miRNA:   3'- cuuuaCGG--CCG--GUGCCGG-UACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 5917 0.66 0.396399
Target:  5'- cGAggGCCGGUguaGCGGCCuggcuugagGGCGUa -3'
miRNA:   3'- cUUuaCGGCCGg--UGCCGGua-------CCGCAg -5'
23049 5' -58.2 NC_005178.1 + 21281 0.66 0.395469
Target:  5'- ----gGCCGGCCggggaGCGGguuucggugccguCCGUGGCGg- -3'
miRNA:   3'- cuuuaCGGCCGG-----UGCC-------------GGUACCGCag -5'
23049 5' -58.2 NC_005178.1 + 37048 0.67 0.38717
Target:  5'- aGAGuggGCCGGCUcgcuggacgagGCGGCagcacucgcUGGCGUCc -3'
miRNA:   3'- -CUUua-CGGCCGG-----------UGCCGgu-------ACCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 14276 0.67 0.381701
Target:  5'- ---uUGCCGGCgcccugggggaagucCAUGGCCA-GGCG-Cg -3'
miRNA:   3'- cuuuACGGCCG---------------GUGCCGGUaCCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 23247 0.67 0.378084
Target:  5'- cGAGGUGCCcGGCCuucaggACGuuUcgGGCGUCc -3'
miRNA:   3'- -CUUUACGG-CCGG------UGCcgGuaCCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 23445 0.67 0.378084
Target:  5'- ----cGCCcagGGCgACGGCCAgGGCGcCc -3'
miRNA:   3'- cuuuaCGG---CCGgUGCCGGUaCCGCaG- -5'
23049 5' -58.2 NC_005178.1 + 32295 0.67 0.377184
Target:  5'- ----gGUCGGCUcgaccagGCGGCCcagggcGGCGUCg -3'
miRNA:   3'- cuuuaCGGCCGG-------UGCCGGua----CCGCAG- -5'
23049 5' -58.2 NC_005178.1 + 31915 0.67 0.360347
Target:  5'- ---cUGCCGGUCAuCGGCCAUcgcugaucGGCa-- -3'
miRNA:   3'- cuuuACGGCCGGU-GCCGGUA--------CCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.