miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 5' -56.4 NC_005178.1 + 5741 0.76 0.133472
Target:  5'- cGCCGc-AUCGGUGGCGGccUCGgGCa -3'
miRNA:   3'- aCGGCuuUAGCCACCGCCaaGGCgCG- -5'
23055 5' -56.4 NC_005178.1 + 10636 0.66 0.576142
Target:  5'- aGCCGggGcgcaacgcccCGGccGGCGucUCCGCGCc -3'
miRNA:   3'- aCGGCuuUa---------GCCa-CCGCcaAGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 3456 0.66 0.565127
Target:  5'- gGCCG-AGUCGGcccUGGUGGUggUCGaUGCc -3'
miRNA:   3'- aCGGCuUUAGCC---ACCGCCAa-GGC-GCG- -5'
23055 5' -56.4 NC_005178.1 + 27034 0.66 0.554168
Target:  5'- cUGCUGGAGUCGGUGcGCaccaacaaGGaaaaGCGCg -3'
miRNA:   3'- -ACGGCUUUAGCCAC-CG--------CCaaggCGCG- -5'
23055 5' -56.4 NC_005178.1 + 11403 0.67 0.511041
Target:  5'- gGCUGA--UCGGU-GCGGccCUGCGCc -3'
miRNA:   3'- aCGGCUuuAGCCAcCGCCaaGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 10328 0.67 0.500473
Target:  5'- gGCCGGGcgCGGaggGGCGaagcgcgccGggCUGCGCu -3'
miRNA:   3'- aCGGCUUuaGCCa--CCGC---------CaaGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 17214 0.67 0.490001
Target:  5'- cGCCcuGGUCGauaaccuggaacGUGGCGGaacgCUGCGCg -3'
miRNA:   3'- aCGGcuUUAGC------------CACCGCCaa--GGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 16026 0.67 0.469373
Target:  5'- cGCuCGGGAUacGUGGCGcguagcgggcuGUUCCGCGUg -3'
miRNA:   3'- aCG-GCUUUAgcCACCGC-----------CAAGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 1692 0.67 0.469373
Target:  5'- gGUCGAug-UGcGUGGCGG--CCGCGUg -3'
miRNA:   3'- aCGGCUuuaGC-CACCGCCaaGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 31952 0.68 0.449199
Target:  5'- aGCCGAg--CGGUcGGCG-UUCCGUaGCc -3'
miRNA:   3'- aCGGCUuuaGCCA-CCGCcAAGGCG-CG- -5'
23055 5' -56.4 NC_005178.1 + 9462 0.68 0.410343
Target:  5'- cUGCCGGAcgUGGUGGUccGGUaCUGaugaGCa -3'
miRNA:   3'- -ACGGCUUuaGCCACCG--CCAaGGCg---CG- -5'
23055 5' -56.4 NC_005178.1 + 34593 0.72 0.250161
Target:  5'- gGCCGGgcgAGUCGGUGaGCGGgaaaUGCGUc -3'
miRNA:   3'- aCGGCU---UUAGCCAC-CGCCaag-GCGCG- -5'
23055 5' -56.4 NC_005178.1 + 22472 0.73 0.219147
Target:  5'- uUGCCGGAcgacGUCGGcGGCGaGggugagccgUCCGCGUc -3'
miRNA:   3'- -ACGGCUU----UAGCCaCCGC-Ca--------AGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 35476 0.69 0.373645
Target:  5'- gGCUG---UCGGUGGCGG--CCaGCGCc -3'
miRNA:   3'- aCGGCuuuAGCCACCGCCaaGG-CGCG- -5'
23055 5' -56.4 NC_005178.1 + 25693 0.7 0.35615
Target:  5'- gGUCGAAcUCGGcGGUGGcUUUCGcCGCa -3'
miRNA:   3'- aCGGCUUuAGCCaCCGCC-AAGGC-GCG- -5'
23055 5' -56.4 NC_005178.1 + 35325 0.7 0.339239
Target:  5'- gGCCGGua-CGGUaucGGCGcagCCGCGCg -3'
miRNA:   3'- aCGGCUuuaGCCA---CCGCcaaGGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 27325 0.7 0.312628
Target:  5'- -cCUGAAAUCGGUuugcaacugguccaGGCGGUUCUuCGCc -3'
miRNA:   3'- acGGCUUUAGCCA--------------CCGCCAAGGcGCG- -5'
23055 5' -56.4 NC_005178.1 + 22393 0.72 0.237341
Target:  5'- cGCCGGAa--GGUcGGCGGauagCUGCGCa -3'
miRNA:   3'- aCGGCUUuagCCA-CCGCCaa--GGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 11031 0.73 0.217395
Target:  5'- aUGCgGAAAUCGGUGucggugacGCGGggggcaggaggcgggCCGCGCc -3'
miRNA:   3'- -ACGgCUUUAGCCAC--------CGCCaa-------------GGCGCG- -5'
23055 5' -56.4 NC_005178.1 + 21442 0.66 0.576142
Target:  5'- cUGCCa-----GGUGGUGGgggCCGcCGCg -3'
miRNA:   3'- -ACGGcuuuagCCACCGCCaa-GGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.