Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23055 | 5' | -56.4 | NC_005178.1 | + | 34905 | 0.68 | 0.459227 |
Target: 5'- gGgCGGAAUCcagcccgguGGUGGCGGcgCCaCGCc -3' miRNA: 3'- aCgGCUUUAG---------CCACCGCCaaGGcGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 35476 | 0.69 | 0.373645 |
Target: 5'- gGCUG---UCGGUGGCGG--CCaGCGCc -3' miRNA: 3'- aCGGCuuuAGCCACCGCCaaGG-CGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 25693 | 0.7 | 0.35615 |
Target: 5'- gGUCGAAcUCGGcGGUGGcUUUCGcCGCa -3' miRNA: 3'- aCGGCUUuAGCCaCCGCC-AAGGC-GCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 35325 | 0.7 | 0.339239 |
Target: 5'- gGCCGGua-CGGUaucGGCGcagCCGCGCg -3' miRNA: 3'- aCGGCUuuaGCCA---CCGCcaaGGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 27325 | 0.7 | 0.312628 |
Target: 5'- -cCUGAAAUCGGUuugcaacugguccaGGCGGUUCUuCGCc -3' miRNA: 3'- acGGCUUUAGCCA--------------CCGCCAAGGcGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 22393 | 0.72 | 0.237341 |
Target: 5'- cGCCGGAa--GGUcGGCGGauagCUGCGCa -3' miRNA: 3'- aCGGCUUuagCCA-CCGCCaa--GGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 11031 | 0.73 | 0.217395 |
Target: 5'- aUGCgGAAAUCGGUGucggugacGCGGggggcaggaggcgggCCGCGCc -3' miRNA: 3'- -ACGgCUUUAGCCAC--------CGCCaa-------------GGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 30685 | 1.11 | 0.000352 |
Target: 5'- cUGCCGAAAUCGGUGGCGGUUCCGCGCu -3' miRNA: 3'- -ACGGCUUUAGCCACCGCCAAGGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 29908 | 0.66 | 0.576142 |
Target: 5'- aUGCCGAGGcgCGGUcGGUgacccagccaagGGUUUCgGCGUg -3' miRNA: 3'- -ACGGCUUUa-GCCA-CCG------------CCAAGG-CGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 28695 | 0.66 | 0.565127 |
Target: 5'- cGCUGAAGUUcuUGGaCGGUUCCuguaucugagcgGCGCc -3' miRNA: 3'- aCGGCUUUAGccACC-GCCAAGG------------CGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 11579 | 0.67 | 0.521702 |
Target: 5'- uUGCCGggGUUGuuGUuGCGGaugCCGCGa -3' miRNA: 3'- -ACGGCuuUAGC--CAcCGCCaa-GGCGCg -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 20533 | 0.67 | 0.469373 |
Target: 5'- aGCUGGg--CGGUGGCGGcggcgaucugcUcgacgUCCGCGUc -3' miRNA: 3'- aCGGCUuuaGCCACCGCC-----------A-----AGGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 21442 | 0.66 | 0.576142 |
Target: 5'- cUGCCa-----GGUGGUGGgggCCGcCGCg -3' miRNA: 3'- -ACGGcuuuagCCACCGCCaa-GGC-GCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 32352 | 0.67 | 0.521702 |
Target: 5'- -cUCGAccacGUCGGUGGCGGcgCUacagaGCGCc -3' miRNA: 3'- acGGCUu---UAGCCACCGCCaaGG-----CGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 20952 | 0.66 | 0.554168 |
Target: 5'- gUGuuGcgGUCGGUGGUcaGGgcggUCauaGCGCc -3' miRNA: 3'- -ACggCuuUAGCCACCG--CCa---AGg--CGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 21089 | 0.68 | 0.419861 |
Target: 5'- gGCCcAGGUaggucaggcCGGUGGCGGUgcugCCGCcCa -3' miRNA: 3'- aCGGcUUUA---------GCCACCGCCAa---GGCGcG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 5340 | 0.67 | 0.521702 |
Target: 5'- cGCCGGcccuGAaCGGUGGCGGccUCgGC-Ca -3' miRNA: 3'- aCGGCU----UUaGCCACCGCCa-AGgCGcG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 16026 | 0.67 | 0.469373 |
Target: 5'- cGCuCGGGAUacGUGGCGcguagcgggcuGUUCCGCGUg -3' miRNA: 3'- aCG-GCUUUAgcCACCGC-----------CAAGGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 10636 | 0.66 | 0.576142 |
Target: 5'- aGCCGggGcgcaacgcccCGGccGGCGucUCCGCGCc -3' miRNA: 3'- aCGGCuuUa---------GCCa-CCGCcaAGGCGCG- -5' |
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23055 | 5' | -56.4 | NC_005178.1 | + | 3456 | 0.66 | 0.565127 |
Target: 5'- gGCCG-AGUCGGcccUGGUGGUggUCGaUGCc -3' miRNA: 3'- aCGGCuUUAGCC---ACCGCCAa-GGC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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