miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23058 3' -59.5 NC_005178.1 + 33234 0.74 0.136856
Target:  5'- uCGUCAUUCUGGCGGCGUCGuUCAUc -3'
miRNA:   3'- cGCGGUAGGGCCGCUGCAGCcAGUGc -5'
23058 3' -59.5 NC_005178.1 + 12943 0.66 0.451116
Target:  5'- cGCGCCAggugcuggccggCCUGGUGACccaGUCcaGGcCACGa -3'
miRNA:   3'- -CGCGGUa-----------GGGCCGCUG---CAG--CCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 22451 0.66 0.437679
Target:  5'- cGCGUCGaguccugcgaguucuUgCCGGaCGACGUCGGcgGCGa -3'
miRNA:   3'- -CGCGGU---------------AgGGCC-GCUGCAGCCagUGC- -5'
23058 3' -59.5 NC_005178.1 + 14951 0.66 0.433882
Target:  5'- -aGgCGUCCUGGaCGugGUCGGgcCGCc -3'
miRNA:   3'- cgCgGUAGGGCC-GCugCAGCCa-GUGc -5'
23058 3' -59.5 NC_005178.1 + 25973 0.66 0.431991
Target:  5'- cGgGCagaucaaggacaGUUUCGGUGGCGUCGG-CGCGa -3'
miRNA:   3'- -CgCGg-----------UAGGGCCGCUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 33572 0.67 0.397
Target:  5'- aCGgCAUCgaGGcCGACGUgcUGGUCGCGa -3'
miRNA:   3'- cGCgGUAGggCC-GCUGCA--GCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 22146 0.67 0.353833
Target:  5'- gGCGCCGaagCCCGcGCuGCuGcCGGUUACGg -3'
miRNA:   3'- -CGCGGUa--GGGC-CGcUG-CaGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 12077 0.67 0.353833
Target:  5'- uGCGaCCAgcgCCUGGUGGag-UGGUCGCGu -3'
miRNA:   3'- -CGC-GGUa--GGGCCGCUgcaGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 9673 0.68 0.314089
Target:  5'- uCGCCGagCCGGcCGAgG-CGGUCACc -3'
miRNA:   3'- cGCGGUagGGCC-GCUgCaGCCAGUGc -5'
23058 3' -59.5 NC_005178.1 + 14916 0.69 0.29191
Target:  5'- aGCGCCAUCCUGGUGG-GagGGUUcaauCGg -3'
miRNA:   3'- -CGCGGUAGGGCCGCUgCagCCAGu---GC- -5'
23058 3' -59.5 NC_005178.1 + 13885 0.69 0.26427
Target:  5'- aGCGCCG-CCCGGCGugaaCGGgccagCGCGg -3'
miRNA:   3'- -CGCGGUaGGGCCGCugcaGCCa----GUGC- -5'
23058 3' -59.5 NC_005178.1 + 27740 0.7 0.251265
Target:  5'- aGCGCCuggaCCUGGCGAgccaGUaCGGUgACGg -3'
miRNA:   3'- -CGCGGua--GGGCCGCUg---CA-GCCAgUGC- -5'
23058 3' -59.5 NC_005178.1 + 30358 0.72 0.165396
Target:  5'- aCGUC-UCCCGGCG-CGUCgucggccccGGUCGCGg -3'
miRNA:   3'- cGCGGuAGGGCCGCuGCAG---------CCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 19808 0.69 0.26427
Target:  5'- cCGCCAUggUGGCGACGgucgagcgcggCGGUUACGg -3'
miRNA:   3'- cGCGGUAggGCCGCUGCa----------GCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 3380 0.7 0.251265
Target:  5'- -gGCCGUCgCaGGaauaGACGUCGGUCGgGa -3'
miRNA:   3'- cgCGGUAGgG-CCg---CUGCAGCCAGUgC- -5'
23058 3' -59.5 NC_005178.1 + 7424 0.71 0.221057
Target:  5'- gGCGUCAUCUgCGGCGAU---GGUCACGc -3'
miRNA:   3'- -CGCGGUAGG-GCCGCUGcagCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 24548 0.71 0.209867
Target:  5'- aUGCCAgcUCCUGgaGCGG-GUCGGUCGCGa -3'
miRNA:   3'- cGCGGU--AGGGC--CGCUgCAGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 31368 0.74 0.136856
Target:  5'- gGCGCCAggcgcauagCCCGGCG-C-UgGGUCACGg -3'
miRNA:   3'- -CGCGGUa--------GGGCCGCuGcAgCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 21259 0.82 0.032332
Target:  5'- gGUGCCGUCCgUGGCGGCGaCGGUCugGu -3'
miRNA:   3'- -CGCGGUAGG-GCCGCUGCaGCCAGugC- -5'
23058 3' -59.5 NC_005178.1 + 18008 0.66 0.440539
Target:  5'- aCGCCgaccgacaucgucuGUCCCuggGGCGACGUggagCGGUcCACa -3'
miRNA:   3'- cGCGG--------------UAGGG---CCGCUGCA----GCCA-GUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.