Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23058 | 3' | -59.5 | NC_005178.1 | + | 37393 | 0.68 | 0.348881 |
Target: 5'- cCGCaCAUCagcugaggaccguagCaaaaaGGCGACGUUGGUCACa -3' miRNA: 3'- cGCG-GUAG---------------Gg----CCGCUGCAGCCAGUGc -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 3380 | 0.7 | 0.251265 |
Target: 5'- -gGCCGUCgCaGGaauaGACGUCGGUCGgGa -3' miRNA: 3'- cgCGGUAGgG-CCg---CUGCAGCCAGUgC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 19808 | 0.69 | 0.26427 |
Target: 5'- cCGCCAUggUGGCGACGgucgagcgcggCGGUUACGg -3' miRNA: 3'- cGCGGUAggGCCGCUGCa----------GCCAGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 26142 | 0.69 | 0.299164 |
Target: 5'- aGCGUCcgCCCcucgGGCGAUGUCGuccaggccGUCGCu -3' miRNA: 3'- -CGCGGuaGGG----CCGCUGCAGC--------CAGUGc -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 21835 | 0.69 | 0.299164 |
Target: 5'- cCGCCG-CCUGGCuGGCGUUGGaaaGCGg -3' miRNA: 3'- cGCGGUaGGGCCG-CUGCAGCCag-UGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 10773 | 0.68 | 0.306557 |
Target: 5'- cCGCCAUCCUGGCGgugagugcgACG-CGGgauuaGCGg -3' miRNA: 3'- cGCGGUAGGGCCGC---------UGCaGCCag---UGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 14729 | 0.68 | 0.306557 |
Target: 5'- cGCGCCGUCCUccauGGCGGCGg----CGCGc -3' miRNA: 3'- -CGCGGUAGGG----CCGCUGCagccaGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 28123 | 0.68 | 0.32176 |
Target: 5'- uCGCCAUCCUGGCcAgGUCGccaaUCAUGg -3' miRNA: 3'- cGCGGUAGGGCCGcUgCAGCc---AGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 17045 | 0.68 | 0.32957 |
Target: 5'- cGUGCCGUUgagCCGGCcccaGGUGUCGGcCACGa -3' miRNA: 3'- -CGCGGUAG---GGCCG----CUGCAGCCaGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 7424 | 0.71 | 0.221057 |
Target: 5'- gGCGUCAUCUgCGGCGAU---GGUCACGc -3' miRNA: 3'- -CGCGGUAGG-GCCGCUGcagCCAGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 4731 | 0.67 | 0.353833 |
Target: 5'- aGgGCgAUgUUGGCGAUGUCGGcCAUGc -3' miRNA: 3'- -CgCGgUAgGGCCGCUGCAGCCaGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 4987 | 0.67 | 0.397 |
Target: 5'- gGCgGCCAguUCCuCGGCGAUcugGUCGGcCAUu -3' miRNA: 3'- -CG-CGGU--AGG-GCCGCUG---CAGCCaGUGc -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 26175 | 0.66 | 0.406031 |
Target: 5'- -aGCCGUCuuGGCGuuGUUGGcCgACGc -3' miRNA: 3'- cgCGGUAGggCCGCugCAGCCaG-UGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 3822 | 0.66 | 0.406031 |
Target: 5'- gGUGCCG-CCCuuGGCGAUGgccCGG-CGCGu -3' miRNA: 3'- -CGCGGUaGGG--CCGCUGCa--GCCaGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 35164 | 0.66 | 0.406031 |
Target: 5'- cCGCCAgcggcagCUCGGCGGCGaguagucCGGUCGgGc -3' miRNA: 3'- cGCGGUa------GGGCCGCUGCa------GCCAGUgC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 22773 | 0.66 | 0.428223 |
Target: 5'- gGCGCUAUggcacucggcagcgaCCCGGCGAUccagcUCGGcCugGg -3' miRNA: 3'- -CGCGGUA---------------GGGCCGCUGc----AGCCaGugC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 7359 | 0.66 | 0.433882 |
Target: 5'- uGCGCUGgagcagCCgGGCGGCGUCguugaaGGUgCGCa -3' miRNA: 3'- -CGCGGUa-----GGgCCGCUGCAG------CCA-GUGc -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 18008 | 0.66 | 0.440539 |
Target: 5'- aCGCCgaccgacaucgucuGUCCCuggGGCGACGUggagCGGUcCACa -3' miRNA: 3'- cGCGG--------------UAGGG---CCGCUGCA----GCCA-GUGc -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 24548 | 0.71 | 0.209867 |
Target: 5'- aUGCCAgcUCCUGgaGCGG-GUCGGUCGCGa -3' miRNA: 3'- cGCGGU--AGGGC--CGCUgCAGCCAGUGC- -5' |
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23058 | 3' | -59.5 | NC_005178.1 | + | 31368 | 0.74 | 0.136856 |
Target: 5'- gGCGCCAggcgcauagCCCGGCG-C-UgGGUCACGg -3' miRNA: 3'- -CGCGGUa--------GGGCCGCuGcAgCCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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