miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23058 3' -59.5 NC_005178.1 + 12077 0.67 0.353833
Target:  5'- uGCGaCCAgcgCCUGGUGGag-UGGUCGCGu -3'
miRNA:   3'- -CGC-GGUa--GGGCCGCUgcaGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 4731 0.67 0.353833
Target:  5'- aGgGCgAUgUUGGCGAUGUCGGcCAUGc -3'
miRNA:   3'- -CgCGgUAgGGCCGCUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 22146 0.67 0.353833
Target:  5'- gGCGCCGaagCCCGcGCuGCuGcCGGUUACGg -3'
miRNA:   3'- -CGCGGUa--GGGC-CGcUG-CaGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 4987 0.67 0.397
Target:  5'- gGCgGCCAguUCCuCGGCGAUcugGUCGGcCAUu -3'
miRNA:   3'- -CG-CGGU--AGG-GCCGCUG---CAGCCaGUGc -5'
23058 3' -59.5 NC_005178.1 + 33572 0.67 0.397
Target:  5'- aCGgCAUCgaGGcCGACGUgcUGGUCGCGa -3'
miRNA:   3'- cGCgGUAGggCC-GCUGCA--GCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 26175 0.66 0.406031
Target:  5'- -aGCCGUCuuGGCGuuGUUGGcCgACGc -3'
miRNA:   3'- cgCGGUAGggCCGCugCAGCCaG-UGC- -5'
23058 3' -59.5 NC_005178.1 + 3822 0.66 0.406031
Target:  5'- gGUGCCG-CCCuuGGCGAUGgccCGG-CGCGu -3'
miRNA:   3'- -CGCGGUaGGG--CCGCUGCa--GCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 35164 0.66 0.406031
Target:  5'- cCGCCAgcggcagCUCGGCGGCGaguagucCGGUCGgGc -3'
miRNA:   3'- cGCGGUa------GGGCCGCUGCa------GCCAGUgC- -5'
23058 3' -59.5 NC_005178.1 + 22773 0.66 0.428223
Target:  5'- gGCGCUAUggcacucggcagcgaCCCGGCGAUccagcUCGGcCugGg -3'
miRNA:   3'- -CGCGGUA---------------GGGCCGCUGc----AGCCaGugC- -5'
23058 3' -59.5 NC_005178.1 + 25973 0.66 0.431991
Target:  5'- cGgGCagaucaaggacaGUUUCGGUGGCGUCGG-CGCGa -3'
miRNA:   3'- -CgCGg-----------UAGGGCCGCUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 14951 0.66 0.433882
Target:  5'- -aGgCGUCCUGGaCGugGUCGGgcCGCc -3'
miRNA:   3'- cgCgGUAGGGCC-GCugCAGCCa-GUGc -5'
23058 3' -59.5 NC_005178.1 + 7359 0.66 0.433882
Target:  5'- uGCGCUGgagcagCCgGGCGGCGUCguugaaGGUgCGCa -3'
miRNA:   3'- -CGCGGUa-----GGgCCGCUGCAG------CCA-GUGc -5'
23058 3' -59.5 NC_005178.1 + 22451 0.66 0.437679
Target:  5'- cGCGUCGaguccugcgaguucuUgCCGGaCGACGUCGGcgGCGa -3'
miRNA:   3'- -CGCGGU---------------AgGGCC-GCUGCAGCCagUGC- -5'
23058 3' -59.5 NC_005178.1 + 18008 0.66 0.440539
Target:  5'- aCGCCgaccgacaucgucuGUCCCuggGGCGACGUggagCGGUcCACa -3'
miRNA:   3'- cGCGG--------------UAGGG---CCGCUGCA----GCCA-GUGc -5'
23058 3' -59.5 NC_005178.1 + 12943 0.66 0.451116
Target:  5'- cGCGCCAggugcuggccggCCUGGUGACccaGUCcaGGcCACGa -3'
miRNA:   3'- -CGCGGUa-----------GGGCCGCUG---CAG--CCaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.