miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23058 3' -59.5 NC_005178.1 + 22451 0.66 0.437679
Target:  5'- cGCGUCGaguccugcgaguucuUgCCGGaCGACGUCGGcgGCGa -3'
miRNA:   3'- -CGCGGU---------------AgGGCC-GCUGCAGCCagUGC- -5'
23058 3' -59.5 NC_005178.1 + 22773 0.66 0.428223
Target:  5'- gGCGCUAUggcacucggcagcgaCCCGGCGAUccagcUCGGcCugGg -3'
miRNA:   3'- -CGCGGUA---------------GGGCCGCUGc----AGCCaGugC- -5'
23058 3' -59.5 NC_005178.1 + 24548 0.71 0.209867
Target:  5'- aUGCCAgcUCCUGgaGCGG-GUCGGUCGCGa -3'
miRNA:   3'- cGCGGU--AGGGC--CGCUgCAGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 25973 0.66 0.431991
Target:  5'- cGgGCagaucaaggacaGUUUCGGUGGCGUCGG-CGCGa -3'
miRNA:   3'- -CgCGg-----------UAGGGCCGCUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 26142 0.69 0.299164
Target:  5'- aGCGUCcgCCCcucgGGCGAUGUCGuccaggccGUCGCu -3'
miRNA:   3'- -CGCGGuaGGG----CCGCUGCAGC--------CAGUGc -5'
23058 3' -59.5 NC_005178.1 + 26175 0.66 0.406031
Target:  5'- -aGCCGUCuuGGCGuuGUUGGcCgACGc -3'
miRNA:   3'- cgCGGUAGggCCGCugCAGCCaG-UGC- -5'
23058 3' -59.5 NC_005178.1 + 27740 0.7 0.251265
Target:  5'- aGCGCCuggaCCUGGCGAgccaGUaCGGUgACGg -3'
miRNA:   3'- -CGCGGua--GGGCCGCUg---CA-GCCAgUGC- -5'
23058 3' -59.5 NC_005178.1 + 28123 0.68 0.32176
Target:  5'- uCGCCAUCCUGGCcAgGUCGccaaUCAUGg -3'
miRNA:   3'- cGCGGUAGGGCCGcUgCAGCc---AGUGC- -5'
23058 3' -59.5 NC_005178.1 + 30358 0.72 0.165396
Target:  5'- aCGUC-UCCCGGCG-CGUCgucggccccGGUCGCGg -3'
miRNA:   3'- cGCGGuAGGGCCGCuGCAG---------CCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 31368 0.74 0.136856
Target:  5'- gGCGCCAggcgcauagCCCGGCG-C-UgGGUCACGg -3'
miRNA:   3'- -CGCGGUa--------GGGCCGCuGcAgCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 31952 1.09 0.000281
Target:  5'- aGCGCCAUCCCGGCGACGUCGGUCACGc -3'
miRNA:   3'- -CGCGGUAGGGCCGCUGCAGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 33234 0.74 0.136856
Target:  5'- uCGUCAUUCUGGCGGCGUCGuUCAUc -3'
miRNA:   3'- cGCGGUAGGGCCGCUGCAGCcAGUGc -5'
23058 3' -59.5 NC_005178.1 + 33572 0.67 0.397
Target:  5'- aCGgCAUCgaGGcCGACGUgcUGGUCGCGa -3'
miRNA:   3'- cGCgGUAGggCC-GCUGCA--GCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 35164 0.66 0.406031
Target:  5'- cCGCCAgcggcagCUCGGCGGCGaguagucCGGUCGgGc -3'
miRNA:   3'- cGCGGUa------GGGCCGCUGCa------GCCAGUgC- -5'
23058 3' -59.5 NC_005178.1 + 37393 0.68 0.348881
Target:  5'- cCGCaCAUCagcugaggaccguagCaaaaaGGCGACGUUGGUCACa -3'
miRNA:   3'- cGCG-GUAG---------------Gg----CCGCUGCAGCCAGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.