miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23058 3' -59.5 NC_005178.1 + 17045 0.68 0.32957
Target:  5'- cGUGCCGUUgagCCGGCcccaGGUGUCGGcCACGa -3'
miRNA:   3'- -CGCGGUAG---GGCCG----CUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 14951 0.66 0.433882
Target:  5'- -aGgCGUCCUGGaCGugGUCGGgcCGCc -3'
miRNA:   3'- cgCgGUAGGGCC-GCugCAGCCa-GUGc -5'
23058 3' -59.5 NC_005178.1 + 14916 0.69 0.29191
Target:  5'- aGCGCCAUCCUGGUGG-GagGGUUcaauCGg -3'
miRNA:   3'- -CGCGGUAGGGCCGCUgCagCCAGu---GC- -5'
23058 3' -59.5 NC_005178.1 + 14729 0.68 0.306557
Target:  5'- cGCGCCGUCCUccauGGCGGCGg----CGCGc -3'
miRNA:   3'- -CGCGGUAGGG----CCGCUGCagccaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 13885 0.69 0.26427
Target:  5'- aGCGCCG-CCCGGCGugaaCGGgccagCGCGg -3'
miRNA:   3'- -CGCGGUaGGGCCGCugcaGCCa----GUGC- -5'
23058 3' -59.5 NC_005178.1 + 12943 0.66 0.451116
Target:  5'- cGCGCCAggugcuggccggCCUGGUGACccaGUCcaGGcCACGa -3'
miRNA:   3'- -CGCGGUa-----------GGGCCGCUG---CAG--CCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 12077 0.67 0.353833
Target:  5'- uGCGaCCAgcgCCUGGUGGag-UGGUCGCGu -3'
miRNA:   3'- -CGC-GGUa--GGGCCGCUgcaGCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 10773 0.68 0.306557
Target:  5'- cCGCCAUCCUGGCGgugagugcgACG-CGGgauuaGCGg -3'
miRNA:   3'- cGCGGUAGGGCCGC---------UGCaGCCag---UGC- -5'
23058 3' -59.5 NC_005178.1 + 9673 0.68 0.314089
Target:  5'- uCGCCGagCCGGcCGAgG-CGGUCACc -3'
miRNA:   3'- cGCGGUagGGCC-GCUgCaGCCAGUGc -5'
23058 3' -59.5 NC_005178.1 + 7424 0.71 0.221057
Target:  5'- gGCGUCAUCUgCGGCGAU---GGUCACGc -3'
miRNA:   3'- -CGCGGUAGG-GCCGCUGcagCCAGUGC- -5'
23058 3' -59.5 NC_005178.1 + 7359 0.66 0.433882
Target:  5'- uGCGCUGgagcagCCgGGCGGCGUCguugaaGGUgCGCa -3'
miRNA:   3'- -CGCGGUa-----GGgCCGCUGCAG------CCA-GUGc -5'
23058 3' -59.5 NC_005178.1 + 4987 0.67 0.397
Target:  5'- gGCgGCCAguUCCuCGGCGAUcugGUCGGcCAUu -3'
miRNA:   3'- -CG-CGGU--AGG-GCCGCUG---CAGCCaGUGc -5'
23058 3' -59.5 NC_005178.1 + 4731 0.67 0.353833
Target:  5'- aGgGCgAUgUUGGCGAUGUCGGcCAUGc -3'
miRNA:   3'- -CgCGgUAgGGCCGCUGCAGCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 3822 0.66 0.406031
Target:  5'- gGUGCCG-CCCuuGGCGAUGgccCGG-CGCGu -3'
miRNA:   3'- -CGCGGUaGGG--CCGCUGCa--GCCaGUGC- -5'
23058 3' -59.5 NC_005178.1 + 3380 0.7 0.251265
Target:  5'- -gGCCGUCgCaGGaauaGACGUCGGUCGgGa -3'
miRNA:   3'- cgCGGUAGgG-CCg---CUGCAGCCAGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.