Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 8639 | 0.66 | 0.690921 |
Target: 5'- gGUGCAguugGGGCCGgcucGGcCUGCGGcAUGaCCa -3' miRNA: 3'- -CACGUa---UCUGGU----CC-GAUGCCuUGC-GG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 35423 | 0.66 | 0.702219 |
Target: 5'- -aGCA---GCCGGGCc-UGGAGCGUCa -3' miRNA: 3'- caCGUaucUGGUCCGauGCCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 23622 | 0.66 | 0.702219 |
Target: 5'- cUGUAgcuGACUggcgaagccugcGGGCUGCGGGccagcggagugACGCCc -3' miRNA: 3'- cACGUau-CUGG------------UCCGAUGCCU-----------UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 4386 | 0.7 | 0.466787 |
Target: 5'- cGUGCcgAGGCCGGGg-AUGGAcagcgGCGCa -3' miRNA: 3'- -CACGuaUCUGGUCCgaUGCCU-----UGCGg -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 32027 | 1.13 | 0.000436 |
Target: 5'- aGUGCAUAGACCAGGCUACGGAACGCCg -3' miRNA: 3'- -CACGUAUCUGGUCCGAUGCCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 29790 | 0.81 | 0.084203 |
Target: 5'- uUGCGUAGAgCCagGGGUUGcCGGAGCGCCa -3' miRNA: 3'- cACGUAUCU-GG--UCCGAU-GCCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 18152 | 0.72 | 0.32543 |
Target: 5'- -gGC-UGGGCCAGGCgcUGCGGcagguuCGCCa -3' miRNA: 3'- caCGuAUCUGGUCCG--AUGCCuu----GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 30039 | 0.72 | 0.359847 |
Target: 5'- cUGCAccgAGuuGCCGGGCUGCGcGuuccACGCCa -3' miRNA: 3'- cACGUa--UC--UGGUCCGAUGC-Cu---UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 7230 | 0.72 | 0.359847 |
Target: 5'- uUGCGUGGA-CAGGC-GCGGcACGCUu -3' miRNA: 3'- cACGUAUCUgGUCCGaUGCCuUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 1489 | 0.71 | 0.368839 |
Target: 5'- -aGCGcGGGCC-GGCUGCGGAACaUCg -3' miRNA: 3'- caCGUaUCUGGuCCGAUGCCUUGcGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 33960 | 0.71 | 0.396725 |
Target: 5'- -aGCAUcGccGCCAGGCgcgGCaGGACGCCc -3' miRNA: 3'- caCGUAuC--UGGUCCGa--UGcCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 16129 | 0.7 | 0.446099 |
Target: 5'- aGUGCuugaacagGUAcGGCCAGGCcagcacGCGGAACaGCCc -3' miRNA: 3'- -CACG--------UAU-CUGGUCCGa-----UGCCUUG-CGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 18735 | 0.68 | 0.576531 |
Target: 5'- -----aGGACCGGGaggUACGGGcGCGCCg -3' miRNA: 3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 9213 | 0.69 | 0.486891 |
Target: 5'- gGUGUAUAcGGCCAuGGCUAUGccuccuucugugcGGAUGCCu -3' miRNA: 3'- -CACGUAU-CUGGU-CCGAUGC-------------CUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 35528 | 0.69 | 0.48796 |
Target: 5'- aUGCGgaacuGGCCGGGCgggUACGGcuuaccuuGGCGCCc -3' miRNA: 3'- cACGUau---CUGGUCCG---AUGCC--------UUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 12281 | 0.69 | 0.498716 |
Target: 5'- -cGCuu-GGCCAGGCgcUGGAAaagaGCCg -3' miRNA: 3'- caCGuauCUGGUCCGauGCCUUg---CGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 37186 | 0.69 | 0.521634 |
Target: 5'- -aGCuccUGGACCucGGCgaggaggucgucgggAUGGAACGCCa -3' miRNA: 3'- caCGu--AUCUGGu-CCGa--------------UGCCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 34729 | 0.68 | 0.528257 |
Target: 5'- -gGCcagGGuuCAGGCUACGGGcgcggcggucgaacACGCCc -3' miRNA: 3'- caCGua-UCugGUCCGAUGCCU--------------UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 32713 | 0.68 | 0.531581 |
Target: 5'- aGUGCAUGucguagacGACCAGGUcgACGGcacCGCUc -3' miRNA: 3'- -CACGUAU--------CUGGUCCGa-UGCCuu-GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 25982 | 0.68 | 0.531581 |
Target: 5'- -gGCAUcccgcuGGCCAGGCUGgugaccacguCGGugaucuGCGCCg -3' miRNA: 3'- caCGUAu-----CUGGUCCGAU----------GCCu-----UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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