miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 19899 0.71 0.406317
Target:  5'- aUGgAUGuGCCGGGCUgGCGGAucgAUGCCg -3'
miRNA:   3'- cACgUAUcUGGUCCGA-UGCCU---UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12102 0.7 0.466787
Target:  5'- -cGCGUggcGGGCCuGGCcgAUGGGcGCGCCg -3'
miRNA:   3'- caCGUA---UCUGGuCCGa-UGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 26747 0.69 0.509575
Target:  5'- -gGCGUGGGCCGGaCggagACacccgaGGAACGCCu -3'
miRNA:   3'- caCGUAUCUGGUCcGa---UG------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18333 0.69 0.520532
Target:  5'- -aGCugGUGGACCgcgAGGUccaGGAGCGCCu -3'
miRNA:   3'- caCG--UAUCUGG---UCCGaugCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12643 0.69 0.520532
Target:  5'- cGUGCuGUAcggcucggcGGCCGGcGCgcugGCGGGugGCCu -3'
miRNA:   3'- -CACG-UAU---------CUGGUC-CGa---UGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 27259 0.68 0.553921
Target:  5'- -cGCcUGGACCA-GUUGCaaaccgauuucaGGAACGCCg -3'
miRNA:   3'- caCGuAUCUGGUcCGAUG------------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 20034 0.67 0.610795
Target:  5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3'
miRNA:   3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 21285 0.67 0.610795
Target:  5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3'
miRNA:   3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 16588 0.67 0.62227
Target:  5'- -gGuCGaAGACCAGGCgg-GGGGCGCg -3'
miRNA:   3'- caC-GUaUCUGGUCCGaugCCUUGCGg -5'
23059 5' -53.7 NC_005178.1 + 13188 0.67 0.633755
Target:  5'- -aGCu--GGCCAGGCgcUGGAGCaCCu -3'
miRNA:   3'- caCGuauCUGGUCCGauGCCUUGcGG- -5'
23059 5' -53.7 NC_005178.1 + 5219 0.67 0.633755
Target:  5'- -gGCuGUAGaccggcGCCAGGUUGCGG-GCGUCc -3'
miRNA:   3'- caCG-UAUC------UGGUCCGAUGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 30286 0.67 0.633755
Target:  5'- gGUGCGacGACCAGuuGCU-UGuGAGCGCCu -3'
miRNA:   3'- -CACGUauCUGGUC--CGAuGC-CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 22067 0.67 0.645238
Target:  5'- -aGCAggaACCAGGCgguguCGGAcucgauACGCCc -3'
miRNA:   3'- caCGUaucUGGUCCGau---GCCU------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 11009 0.67 0.645238
Target:  5'- -cGCGgGGGgCAGGagGCGGGccGCGCCg -3'
miRNA:   3'- caCGUaUCUgGUCCgaUGCCU--UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 14442 0.66 0.656708
Target:  5'- cUGCu----CCGGGCUGCGGAcguucuCGUCg -3'
miRNA:   3'- cACGuaucuGGUCCGAUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 28293 0.66 0.679562
Target:  5'- -gGCAgcGGCCuGGauaGCGGcGGCGCCg -3'
miRNA:   3'- caCGUauCUGGuCCga-UGCC-UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 3119 0.66 0.687519
Target:  5'- -cGCucauGuCCGGGCgGCGGAccuucggcaccaggGCGCCa -3'
miRNA:   3'- caCGuau-CuGGUCCGaUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 32291 0.66 0.690921
Target:  5'- -gGCuc-GACCAGGCggcccaggGCGGcgucgAugGCCa -3'
miRNA:   3'- caCGuauCUGGUCCGa-------UGCC-----UugCGG- -5'
23059 5' -53.7 NC_005178.1 + 31188 0.66 0.690921
Target:  5'- cGUGCAUuGACCAcGG--GCGGGcCGUCg -3'
miRNA:   3'- -CACGUAuCUGGU-CCgaUGCCUuGCGG- -5'
23059 5' -53.7 NC_005178.1 + 20498 0.66 0.690921
Target:  5'- -cGCGUccuGGGCCAGGCcgaGGGuuucGCGCa -3'
miRNA:   3'- caCGUA---UCUGGUCCGaugCCU----UGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.