miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 14442 0.66 0.656708
Target:  5'- cUGCu----CCGGGCUGCGGAcguucuCGUCg -3'
miRNA:   3'- cACGuaucuGGUCCGAUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 15816 0.67 0.633755
Target:  5'- uUGCAUGGACgGcgucGGCcACGGcuauAGCGCUa -3'
miRNA:   3'- cACGUAUCUGgU----CCGaUGCC----UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 16129 0.7 0.446099
Target:  5'- aGUGCuugaacagGUAcGGCCAGGCcagcacGCGGAACaGCCc -3'
miRNA:   3'- -CACG--------UAU-CUGGUCCGa-----UGCCUUG-CGG- -5'
23059 5' -53.7 NC_005178.1 + 16415 0.77 0.165036
Target:  5'- gGUGCGccauGACCuacuGGCUGCGGAugccCGCCa -3'
miRNA:   3'- -CACGUau--CUGGu---CCGAUGCCUu---GCGG- -5'
23059 5' -53.7 NC_005178.1 + 16588 0.67 0.62227
Target:  5'- -gGuCGaAGACCAGGCgg-GGGGCGCg -3'
miRNA:   3'- caC-GUaUCUGGUCCGaugCCUUGCGg -5'
23059 5' -53.7 NC_005178.1 + 16787 0.66 0.668154
Target:  5'- -aGCGcUGGACCAGGUgcUGGccaGCCu -3'
miRNA:   3'- caCGU-AUCUGGUCCGauGCCuugCGG- -5'
23059 5' -53.7 NC_005178.1 + 18152 0.72 0.32543
Target:  5'- -gGC-UGGGCCAGGCgcUGCGGcagguuCGCCa -3'
miRNA:   3'- caCGuAUCUGGUCCG--AUGCCuu----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 18204 0.66 0.668154
Target:  5'- -gGCGUcuauGGGCCGGGCcaaAUGGAGaacaucaGCCa -3'
miRNA:   3'- caCGUA----UCUGGUCCGa--UGCCUUg------CGG- -5'
23059 5' -53.7 NC_005178.1 + 18333 0.69 0.520532
Target:  5'- -aGCugGUGGACCgcgAGGUccaGGAGCGCCu -3'
miRNA:   3'- caCG--UAUCUGG---UCCGaugCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18735 0.68 0.576531
Target:  5'- -----aGGACCGGGaggUACGGGcGCGCCg -3'
miRNA:   3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 19899 0.71 0.406317
Target:  5'- aUGgAUGuGCCGGGCUgGCGGAucgAUGCCg -3'
miRNA:   3'- cACgUAUcUGGUCCGA-UGCCU---UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 20034 0.67 0.610795
Target:  5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3'
miRNA:   3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 20498 0.66 0.690921
Target:  5'- -cGCGUccuGGGCCAGGCcgaGGGuuucGCGCa -3'
miRNA:   3'- caCGUA---UCUGGUCCGaugCCU----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 21285 0.67 0.610795
Target:  5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3'
miRNA:   3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 22067 0.67 0.645238
Target:  5'- -aGCAggaACCAGGCgguguCGGAcucgauACGCCc -3'
miRNA:   3'- caCGUaucUGGUCCGau---GCCU------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 22543 0.76 0.190096
Target:  5'- -aGCAgagGGACCGccccuGGCcACGGAugGCCa -3'
miRNA:   3'- caCGUa--UCUGGU-----CCGaUGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 23622 0.66 0.702219
Target:  5'- cUGUAgcuGACUggcgaagccugcGGGCUGCGGGccagcggagugACGCCc -3'
miRNA:   3'- cACGUau-CUGG------------UCCGAUGCCU-----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 24430 0.67 0.59934
Target:  5'- -gGCAUcaACCuGGCcgaagGCGGcGCGCCg -3'
miRNA:   3'- caCGUAucUGGuCCGa----UGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 25303 0.66 0.702219
Target:  5'- gGUGC--GGACCAGGUcgaGGAACuGUCc -3'
miRNA:   3'- -CACGuaUCUGGUCCGaugCCUUG-CGG- -5'
23059 5' -53.7 NC_005178.1 + 25610 0.66 0.702219
Target:  5'- -aGCAacgagcGGCCgAGGCUGCGGcgaaaGCCa -3'
miRNA:   3'- caCGUau----CUGG-UCCGAUGCCuug--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.