miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 1489 0.71 0.368839
Target:  5'- -aGCGcGGGCC-GGCUGCGGAACaUCg -3'
miRNA:   3'- caCGUaUCUGGuCCGAUGCCUUGcGG- -5'
23059 5' -53.7 NC_005178.1 + 1886 0.67 0.59934
Target:  5'- -gGCccUGGugCAGGCUGaGGAGuauCGCCa -3'
miRNA:   3'- caCGu-AUCugGUCCGAUgCCUU---GCGG- -5'
23059 5' -53.7 NC_005178.1 + 3017 0.71 0.396725
Target:  5'- -aGCGcuuccUGGACCAGGCcgaGCGuGGCGCCc -3'
miRNA:   3'- caCGU-----AUCUGGUCCGa--UGCcUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 3119 0.66 0.687519
Target:  5'- -cGCucauGuCCGGGCgGCGGAccuucggcaccaggGCGCCa -3'
miRNA:   3'- caCGuau-CuGGUCCGaUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 3190 0.66 0.702219
Target:  5'- -aGCcUGGACCAGGuCUAUGcGuuccuGCGCa -3'
miRNA:   3'- caCGuAUCUGGUCC-GAUGC-Cu----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 4386 0.7 0.466787
Target:  5'- cGUGCcgAGGCCGGGg-AUGGAcagcgGCGCa -3'
miRNA:   3'- -CACGuaUCUGGUCCgaUGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 5219 0.67 0.633755
Target:  5'- -gGCuGUAGaccggcGCCAGGUUGCGG-GCGUCc -3'
miRNA:   3'- caCG-UAUC------UGGUCCGAUGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 6697 0.66 0.695448
Target:  5'- -cGCcUGGACCGGGCgGCcucacugcugagccaGGAggugccgccauGCGCCg -3'
miRNA:   3'- caCGuAUCUGGUCCGaUG---------------CCU-----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 7230 0.72 0.359847
Target:  5'- uUGCGUGGA-CAGGC-GCGGcACGCUu -3'
miRNA:   3'- cACGUAUCUgGUCCGaUGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 8121 0.66 0.690921
Target:  5'- -aGUucgguGACCAGGUgccCGaGGGCGCCa -3'
miRNA:   3'- caCGuau--CUGGUCCGau-GC-CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 8639 0.66 0.690921
Target:  5'- gGUGCAguugGGGCCGgcucGGcCUGCGGcAUGaCCa -3'
miRNA:   3'- -CACGUa---UCUGGU----CC-GAUGCCuUGC-GG- -5'
23059 5' -53.7 NC_005178.1 + 9213 0.69 0.486891
Target:  5'- gGUGUAUAcGGCCAuGGCUAUGccuccuucugugcGGAUGCCu -3'
miRNA:   3'- -CACGUAU-CUGGU-CCGAUGC-------------CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 10321 0.72 0.359847
Target:  5'- -aGCcgaGGGCCGGGC-GCGGAggggcgaagcGCGCCg -3'
miRNA:   3'- caCGua-UCUGGUCCGaUGCCU----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 10575 0.68 0.576531
Target:  5'- -cGCu--GAgCAGGCUACGGGcgguuUGCCc -3'
miRNA:   3'- caCGuauCUgGUCCGAUGCCUu----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 11009 0.67 0.645238
Target:  5'- -cGCGgGGGgCAGGagGCGGGccGCGCCg -3'
miRNA:   3'- caCGUaUCUgGUCCgaUGCCU--UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 11991 0.66 0.672722
Target:  5'- gGUGCGggcUGGuACCGGGCUGCugccgaGGucuuccgaaugaccuGGCGCCu -3'
miRNA:   3'- -CACGU---AUC-UGGUCCGAUG------CC---------------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12102 0.7 0.466787
Target:  5'- -cGCGUggcGGGCCuGGCcgAUGGGcGCGCCg -3'
miRNA:   3'- caCGUA---UCUGGuCCGa-UGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12281 0.69 0.498716
Target:  5'- -cGCuu-GGCCAGGCgcUGGAAaagaGCCg -3'
miRNA:   3'- caCGuauCUGGUCCGauGCCUUg---CGG- -5'
23059 5' -53.7 NC_005178.1 + 12643 0.69 0.520532
Target:  5'- cGUGCuGUAcggcucggcGGCCGGcGCgcugGCGGGugGCCu -3'
miRNA:   3'- -CACG-UAU---------CUGGUC-CGa---UGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 13188 0.67 0.633755
Target:  5'- -aGCu--GGCCAGGCgcUGGAGCaCCu -3'
miRNA:   3'- caCGuauCUGGUCCGauGCCUUGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.