miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 37384 0.71 0.368839
Target:  5'- gGUGCuUAGACagAGGCUGCGGGcggaGCUg -3'
miRNA:   3'- -CACGuAUCUGg-UCCGAUGCCUug--CGG- -5'
23059 5' -53.7 NC_005178.1 + 37186 0.69 0.521634
Target:  5'- -aGCuccUGGACCucGGCgaggaggucgucgggAUGGAACGCCa -3'
miRNA:   3'- caCGu--AUCUGGu-CCGa--------------UGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 35528 0.69 0.48796
Target:  5'- aUGCGgaacuGGCCGGGCgggUACGGcuuaccuuGGCGCCc -3'
miRNA:   3'- cACGUau---CUGGUCCG---AUGCC--------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 35501 0.66 0.690921
Target:  5'- -cGCGUAcccGGCgaAGGuCUACGGGGCGUUa -3'
miRNA:   3'- caCGUAU---CUGg-UCC-GAUGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 35423 0.66 0.702219
Target:  5'- -aGCA---GCCGGGCc-UGGAGCGUCa -3'
miRNA:   3'- caCGUaucUGGUCCGauGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 34834 0.67 0.586775
Target:  5'- -gGCGUGGcgccgccaccACCGGGCUGgauuccgcccgacCGG-ACGCCu -3'
miRNA:   3'- caCGUAUC----------UGGUCCGAU-------------GCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 34729 0.68 0.528257
Target:  5'- -gGCcagGGuuCAGGCUACGGGcgcggcggucgaacACGCCc -3'
miRNA:   3'- caCGua-UCugGUCCGAUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 34172 0.67 0.587915
Target:  5'- -cGCGaaUGGACgAGGCgagcugGCGGGcCGCUg -3'
miRNA:   3'- caCGU--AUCUGgUCCGa-----UGCCUuGCGG- -5'
23059 5' -53.7 NC_005178.1 + 33960 0.71 0.396725
Target:  5'- -aGCAUcGccGCCAGGCgcgGCaGGACGCCc -3'
miRNA:   3'- caCGUAuC--UGGUCCGa--UGcCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 32713 0.68 0.531581
Target:  5'- aGUGCAUGucguagacGACCAGGUcgACGGcacCGCUc -3'
miRNA:   3'- -CACGUAU--------CUGGUCCGa-UGCCuu-GCGG- -5'
23059 5' -53.7 NC_005178.1 + 32291 0.66 0.690921
Target:  5'- -gGCuc-GACCAGGCggcccaggGCGGcgucgAugGCCa -3'
miRNA:   3'- caCGuauCUGGUCCGa-------UGCC-----UugCGG- -5'
23059 5' -53.7 NC_005178.1 + 32027 1.13 0.000436
Target:  5'- aGUGCAUAGACCAGGCUACGGAACGCCg -3'
miRNA:   3'- -CACGUAUCUGGUCCGAUGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 31188 0.66 0.690921
Target:  5'- cGUGCAUuGACCAcGG--GCGGGcCGUCg -3'
miRNA:   3'- -CACGUAuCUGGU-CCgaUGCCUuGCGG- -5'
23059 5' -53.7 NC_005178.1 + 30286 0.67 0.633755
Target:  5'- gGUGCGacGACCAGuuGCU-UGuGAGCGCCu -3'
miRNA:   3'- -CACGUauCUGGUC--CGAuGC-CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 30039 0.72 0.359847
Target:  5'- cUGCAccgAGuuGCCGGGCUGCGcGuuccACGCCa -3'
miRNA:   3'- cACGUa--UC--UGGUCCGAUGC-Cu---UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 29790 0.81 0.084203
Target:  5'- uUGCGUAGAgCCagGGGUUGcCGGAGCGCCa -3'
miRNA:   3'- cACGUAUCU-GG--UCCGAU-GCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 28293 0.66 0.679562
Target:  5'- -gGCAgcGGCCuGGauaGCGGcGGCGCCg -3'
miRNA:   3'- caCGUauCUGGuCCga-UGCC-UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 28284 0.72 0.342327
Target:  5'- aGUGgGguGACCGGcGCUGCGGGAgcUGCCg -3'
miRNA:   3'- -CACgUauCUGGUC-CGAUGCCUU--GCGG- -5'
23059 5' -53.7 NC_005178.1 + 27259 0.68 0.553921
Target:  5'- -cGCcUGGACCA-GUUGCaaaccgauuucaGGAACGCCg -3'
miRNA:   3'- caCGuAUCUGGUcCGAUG------------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 26747 0.69 0.509575
Target:  5'- -gGCGUGGGCCGGaCggagACacccgaGGAACGCCu -3'
miRNA:   3'- caCGUAUCUGGUCcGa---UG------CCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.