miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 22543 0.76 0.190096
Target:  5'- -aGCAgagGGACCGccccuGGCcACGGAugGCCa -3'
miRNA:   3'- caCGUa--UCUGGU-----CCGaUGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 11991 0.66 0.672722
Target:  5'- gGUGCGggcUGGuACCGGGCUGCugccgaGGucuuccgaaugaccuGGCGCCu -3'
miRNA:   3'- -CACGU---AUC-UGGUCCGAUG------CC---------------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18204 0.66 0.668154
Target:  5'- -gGCGUcuauGGGCCGGGCcaaAUGGAGaacaucaGCCa -3'
miRNA:   3'- caCGUA----UCUGGUCCGa--UGCCUUg------CGG- -5'
23059 5' -53.7 NC_005178.1 + 16787 0.66 0.668154
Target:  5'- -aGCGcUGGACCAGGUgcUGGccaGCCu -3'
miRNA:   3'- caCGU-AUCUGGUCCGauGCCuugCGG- -5'
23059 5' -53.7 NC_005178.1 + 15816 0.67 0.633755
Target:  5'- uUGCAUGGACgGcgucGGCcACGGcuauAGCGCUa -3'
miRNA:   3'- cACGUAUCUGgU----CCGaUGCC----UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 24430 0.67 0.59934
Target:  5'- -gGCAUcaACCuGGCcgaagGCGGcGCGCCg -3'
miRNA:   3'- caCGUAucUGGuCCGa----UGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 1886 0.67 0.59934
Target:  5'- -gGCccUGGugCAGGCUGaGGAGuauCGCCa -3'
miRNA:   3'- caCGu-AUCugGUCCGAUgCCUU---GCGG- -5'
23059 5' -53.7 NC_005178.1 + 34172 0.67 0.587915
Target:  5'- -cGCGaaUGGACgAGGCgagcugGCGGGcCGCUg -3'
miRNA:   3'- caCGU--AUCUGgUCCGa-----UGCCUuGCGG- -5'
23059 5' -53.7 NC_005178.1 + 34834 0.67 0.586775
Target:  5'- -gGCGUGGcgccgccaccACCGGGCUGgauuccgcccgacCGG-ACGCCu -3'
miRNA:   3'- caCGUAUC----------UGGUCCGAU-------------GCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 27259 0.68 0.553921
Target:  5'- -cGCcUGGACCA-GUUGCaaaccgauuucaGGAACGCCg -3'
miRNA:   3'- caCGuAUCUGGUcCGAUG------------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12643 0.69 0.520532
Target:  5'- cGUGCuGUAcggcucggcGGCCGGcGCgcugGCGGGugGCCu -3'
miRNA:   3'- -CACG-UAU---------CUGGUC-CGa---UGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 18333 0.69 0.520532
Target:  5'- -aGCugGUGGACCgcgAGGUccaGGAGCGCCu -3'
miRNA:   3'- caCG--UAUCUGG---UCCGaugCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 26747 0.69 0.509575
Target:  5'- -gGCGUGGGCCGGaCggagACacccgaGGAACGCCu -3'
miRNA:   3'- caCGUAUCUGGUCcGa---UG------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12102 0.7 0.466787
Target:  5'- -cGCGUggcGGGCCuGGCcgAUGGGcGCGCCg -3'
miRNA:   3'- caCGUA---UCUGGuCCGa-UGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 19899 0.71 0.406317
Target:  5'- aUGgAUGuGCCGGGCUgGCGGAucgAUGCCg -3'
miRNA:   3'- cACgUAUcUGGUCCGA-UGCCU---UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 3017 0.71 0.396725
Target:  5'- -aGCGcuuccUGGACCAGGCcgaGCGuGGCGCCc -3'
miRNA:   3'- caCGU-----AUCUGGUCCGa--UGCcUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 37384 0.71 0.368839
Target:  5'- gGUGCuUAGACagAGGCUGCGGGcggaGCUg -3'
miRNA:   3'- -CACGuAUCUGg-UCCGAUGCCUug--CGG- -5'
23059 5' -53.7 NC_005178.1 + 10321 0.72 0.359847
Target:  5'- -aGCcgaGGGCCGGGC-GCGGAggggcgaagcGCGCCg -3'
miRNA:   3'- caCGua-UCUGGUCCGaUGCCU----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 28284 0.72 0.342327
Target:  5'- aGUGgGguGACCGGcGCUGCGGGAgcUGCCg -3'
miRNA:   3'- -CACgUauCUGGUC-CGAUGCCUU--GCGG- -5'
23059 5' -53.7 NC_005178.1 + 16415 0.77 0.165036
Target:  5'- gGUGCGccauGACCuacuGGCUGCGGAugccCGCCa -3'
miRNA:   3'- -CACGUau--CUGGu---CCGAUGCCUu---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.