miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 32027 1.13 0.000436
Target:  5'- aGUGCAUAGACCAGGCUACGGAACGCCg -3'
miRNA:   3'- -CACGUAUCUGGUCCGAUGCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18735 0.68 0.576531
Target:  5'- -----aGGACCGGGaggUACGGGcGCGCCg -3'
miRNA:   3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 21285 0.67 0.610795
Target:  5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3'
miRNA:   3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 23622 0.66 0.702219
Target:  5'- cUGUAgcuGACUggcgaagccugcGGGCUGCGGGccagcggagugACGCCc -3'
miRNA:   3'- cACGUau-CUGG------------UCCGAUGCCU-----------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 7230 0.72 0.359847
Target:  5'- uUGCGUGGA-CAGGC-GCGGcACGCUu -3'
miRNA:   3'- cACGUAUCUgGUCCGaUGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 1489 0.71 0.368839
Target:  5'- -aGCGcGGGCC-GGCUGCGGAACaUCg -3'
miRNA:   3'- caCGUaUCUGGuCCGAUGCCUUGcGG- -5'
23059 5' -53.7 NC_005178.1 + 16129 0.7 0.446099
Target:  5'- aGUGCuugaacagGUAcGGCCAGGCcagcacGCGGAACaGCCc -3'
miRNA:   3'- -CACG--------UAU-CUGGUCCGa-----UGCCUUG-CGG- -5'
23059 5' -53.7 NC_005178.1 + 4386 0.7 0.466787
Target:  5'- cGUGCcgAGGCCGGGg-AUGGAcagcgGCGCa -3'
miRNA:   3'- -CACGuaUCUGGUCCgaUGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 12281 0.69 0.498716
Target:  5'- -cGCuu-GGCCAGGCgcUGGAAaagaGCCg -3'
miRNA:   3'- caCGuauCUGGUCCGauGCCUUg---CGG- -5'
23059 5' -53.7 NC_005178.1 + 10575 0.68 0.576531
Target:  5'- -cGCu--GAgCAGGCUACGGGcgguuUGCCc -3'
miRNA:   3'- caCGuauCUgGUCCGAUGCCUu----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 34729 0.68 0.528257
Target:  5'- -gGCcagGGuuCAGGCUACGGGcgcggcggucgaacACGCCc -3'
miRNA:   3'- caCGua-UCugGUCCGAUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 35528 0.69 0.48796
Target:  5'- aUGCGgaacuGGCCGGGCgggUACGGcuuaccuuGGCGCCc -3'
miRNA:   3'- cACGUau---CUGGUCCG---AUGCC--------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 29790 0.81 0.084203
Target:  5'- uUGCGUAGAgCCagGGGUUGcCGGAGCGCCa -3'
miRNA:   3'- cACGUAUCU-GG--UCCGAU-GCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 32713 0.68 0.531581
Target:  5'- aGUGCAUGucguagacGACCAGGUcgACGGcacCGCUc -3'
miRNA:   3'- -CACGUAU--------CUGGUCCGa-UGCCuu-GCGG- -5'
23059 5' -53.7 NC_005178.1 + 18152 0.72 0.32543
Target:  5'- -gGC-UGGGCCAGGCgcUGCGGcagguuCGCCa -3'
miRNA:   3'- caCGuAUCUGGUCCG--AUGCCuu----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 9213 0.69 0.486891
Target:  5'- gGUGUAUAcGGCCAuGGCUAUGccuccuucugugcGGAUGCCu -3'
miRNA:   3'- -CACGUAU-CUGGU-CCGAUGC-------------CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 25982 0.68 0.531581
Target:  5'- -gGCAUcccgcuGGCCAGGCUGgugaccacguCGGugaucuGCGCCg -3'
miRNA:   3'- caCGUAu-----CUGGUCCGAU----------GCCu-----UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 20034 0.67 0.610795
Target:  5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3'
miRNA:   3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 30039 0.72 0.359847
Target:  5'- cUGCAccgAGuuGCCGGGCUGCGcGuuccACGCCa -3'
miRNA:   3'- cACGUa--UC--UGGUCCGAUGC-Cu---UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 33960 0.71 0.396725
Target:  5'- -aGCAUcGccGCCAGGCgcgGCaGGACGCCc -3'
miRNA:   3'- caCGUAuC--UGGUCCGa--UGcCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.