Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23060 | 3' | -58 | NC_005178.1 | + | 1558 | 0.68 | 0.352033 |
Target: 5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3' miRNA: 3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 2380 | 0.71 | 0.216962 |
Target: 5'- uGCGGCCUGGCCGACa----GUGAc-- -3' miRNA: 3'- -UGCCGGGCCGGCUGguaagCGCUuug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 2956 | 0.68 | 0.36929 |
Target: 5'- gAUGGCCCgcgauccucgcGGCCGcCCGagCGCGGAugGCu -3' miRNA: 3'- -UGCCGGG-----------CCGGCuGGUaaGCGCUU--UG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 3372 | 0.71 | 0.234281 |
Target: 5'- aGCGGCCCGccagcucGCCucguCCAUUCGCGu-GCg -3' miRNA: 3'- -UGCCGGGC-------CGGcu--GGUAAGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 3635 | 0.66 | 0.463803 |
Target: 5'- cCGGCaCCaGGCCGccgagcaucgccGCCAggCGCGGcagGACg -3' miRNA: 3'- uGCCG-GG-CCGGC------------UGGUaaGCGCU---UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 4913 | 0.66 | 0.434085 |
Target: 5'- cCGGaaaUGGCCGACCAgaUCGCcgaGGAACu -3' miRNA: 3'- uGCCgg-GCCGGCUGGUa-AGCG---CUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 5690 | 0.68 | 0.343621 |
Target: 5'- gGCGGUCUGGCgGACg--UUGCGAAu- -3' miRNA: 3'- -UGCCGGGCCGgCUGguaAGCGCUUug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 5753 | 0.72 | 0.184595 |
Target: 5'- gGCGGCCUcgGGCaCGACCGUgUCGCccAGCa -3' miRNA: 3'- -UGCCGGG--CCG-GCUGGUA-AGCGcuUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 5872 | 0.78 | 0.074758 |
Target: 5'- cCGGCCCucGGCCGcCCAUcguccagCGCGAGACg -3' miRNA: 3'- uGCCGGG--CCGGCuGGUAa------GCGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 7124 | 0.69 | 0.303756 |
Target: 5'- aGCGGCCgGcGCCGcugaacaacCCcgUCGCGAuGCg -3' miRNA: 3'- -UGCCGGgC-CGGCu--------GGuaAGCGCUuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8313 | 0.72 | 0.184595 |
Target: 5'- cCGGCgCCGGCCGACuCGUagaUCGUGcuGACu -3' miRNA: 3'- uGCCG-GGCCGGCUG-GUA---AGCGCu-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8609 | 0.69 | 0.311436 |
Target: 5'- cACGGCgaUGGCCGuGCCGgaCGCGggGa -3' miRNA: 3'- -UGCCGg-GCCGGC-UGGUaaGCGCuuUg -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8922 | 0.67 | 0.414898 |
Target: 5'- uCGGCCCGGCUu-CCGUgCGCuGggGg -3' miRNA: 3'- uGCCGGGCCGGcuGGUAaGCG-CuuUg -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 9175 | 0.73 | 0.170065 |
Target: 5'- cUGGaCCUGGCCG-CCAccCGCGAAGCc -3' miRNA: 3'- uGCC-GGGCCGGCuGGUaaGCGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 9691 | 0.66 | 0.463803 |
Target: 5'- gGCGGCCUggaGGUCGGCguagUUGCGuuGCa -3' miRNA: 3'- -UGCCGGG---CCGGCUGgua-AGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 11212 | 0.66 | 0.484194 |
Target: 5'- --cGCCCGGCUGuucugcACCAUcgUCGCGuccAGCg -3' miRNA: 3'- ugcCGGGCCGGC------UGGUA--AGCGCu--UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12110 | 0.67 | 0.396241 |
Target: 5'- -gGGCCUGGCCGAUgGg-CGCGccGCc -3' miRNA: 3'- ugCCGGGCCGGCUGgUaaGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12650 | 0.68 | 0.36929 |
Target: 5'- uACGGCUCGG-CGGCCgg-CGCGcuGGCg -3' miRNA: 3'- -UGCCGGGCCgGCUGGuaaGCGCu-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12678 | 0.67 | 0.378133 |
Target: 5'- gUGGCCUGGUugccugCGGCCugcUCGCGgcGCg -3' miRNA: 3'- uGCCGGGCCG------GCUGGua-AGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 14449 | 0.7 | 0.274496 |
Target: 5'- uCGGCUCGGCCGAcgacaCCAUggaCGUGAu-- -3' miRNA: 3'- uGCCGGGCCGGCU-----GGUAa--GCGCUuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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