miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 3' -58 NC_005178.1 + 34992 0.66 0.443869
Target:  5'- cUGGCCgagGcGCCGACCAgccugUCGCaGAGCu -3'
miRNA:   3'- uGCCGGg--C-CGGCUGGUa----AGCGcUUUG- -5'
23060 3' -58 NC_005178.1 + 34334 0.68 0.360589
Target:  5'- cGCGGCUgaCGuuGCCGACCuugCGCaGGAACg -3'
miRNA:   3'- -UGCCGG--GC--CGGCUGGuaaGCG-CUUUG- -5'
23060 3' -58 NC_005178.1 + 33977 0.76 0.10263
Target:  5'- gGCGGCCCauaaGGCCGACCGccucgUCGCGc--- -3'
miRNA:   3'- -UGCCGGG----CCGGCUGGUa----AGCGCuuug -5'
23060 3' -58 NC_005178.1 + 33926 0.7 0.254064
Target:  5'- gGCGGCCgGuGCCGGCU-UUC-CGggGCg -3'
miRNA:   3'- -UGCCGGgC-CGGCUGGuAAGcGCuuUG- -5'
23060 3' -58 NC_005178.1 + 33571 0.67 0.378133
Target:  5'- gACGGCaucgaGGCCGACgugcuggUCGCGAccGGCg -3'
miRNA:   3'- -UGCCGgg---CCGGCUGgua----AGCGCU--UUG- -5'
23060 3' -58 NC_005178.1 + 32625 0.69 0.291772
Target:  5'- gGCGGCCaguuccucggcgaucUGGUCGGCCAUUUcCGGGAUg -3'
miRNA:   3'- -UGCCGG---------------GCCGGCUGGUAAGcGCUUUG- -5'
23060 3' -58 NC_005178.1 + 32589 0.72 0.194881
Target:  5'- cACcGCaCCGGCCGACCucgaugUCGCGcuGCu -3'
miRNA:   3'- -UGcCG-GGCCGGCUGGua----AGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 32289 0.67 0.414898
Target:  5'- gGCGGCCuCGGCCaacugcuCCAgguuaacCGCGAcGCg -3'
miRNA:   3'- -UGCCGG-GCCGGcu-----GGUaa-----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 32167 1.09 0.000301
Target:  5'- gACGGCCCGGCCGACCAUUCGCGAAACg -3'
miRNA:   3'- -UGCCGGGCCGGCUGGUAAGCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 32112 0.66 0.463803
Target:  5'- aAUGG-UCGGCCGGgCcgUCGCGAc-- -3'
miRNA:   3'- -UGCCgGGCCGGCUgGuaAGCGCUuug -5'
23060 3' -58 NC_005178.1 + 31708 0.69 0.299218
Target:  5'- aGCGGCCUGGCuugagggcguaauggCGGCCGUU-GCGGGu- -3'
miRNA:   3'- -UGCCGGGCCG---------------GCUGGUAAgCGCUUug -5'
23060 3' -58 NC_005178.1 + 31329 0.69 0.30681
Target:  5'- cACGGCCCgacgacugaacccacGGCUcGCCAUgUCGCGGAu- -3'
miRNA:   3'- -UGCCGGG---------------CCGGcUGGUA-AGCGCUUug -5'
23060 3' -58 NC_005178.1 + 30805 0.66 0.442885
Target:  5'- cGCGGCCUcgaccugGGCCGGCgucuaCGCGgcGCa -3'
miRNA:   3'- -UGCCGGG-------CCGGCUGguaa-GCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 29790 0.68 0.360589
Target:  5'- aGCGaacaaCCCGGCCGACUugcUCGCcAAGCu -3'
miRNA:   3'- -UGCc----GGGCCGGCUGGua-AGCGcUUUG- -5'
23060 3' -58 NC_005178.1 + 28986 0.66 0.473943
Target:  5'- cCGGCUCGGCCugcggcauGACCAaUUGacuGggGCg -3'
miRNA:   3'- uGCCGGGCCGG--------CUGGUaAGCg--CuuUG- -5'
23060 3' -58 NC_005178.1 + 27881 0.67 0.424427
Target:  5'- gACcGCCuCGGCCGGCUcg--GCGAAGCc -3'
miRNA:   3'- -UGcCGG-GCCGGCUGGuaagCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 27652 0.68 0.343621
Target:  5'- cGCGGCCCuaaguccuuGGCCGAgCGcacgccCGCGAcGCg -3'
miRNA:   3'- -UGCCGGG---------CCGGCUgGUaa----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 27297 0.66 0.473943
Target:  5'- gUGGCCggcaGGCCGaugcguccgGCCAUgUCGCGGAc- -3'
miRNA:   3'- uGCCGGg---CCGGC---------UGGUA-AGCGCUUug -5'
23060 3' -58 NC_005178.1 + 26759 0.69 0.319262
Target:  5'- cGCGGCUgGGCuCGGCCAggaUgGCGGcGGCg -3'
miRNA:   3'- -UGCCGGgCCG-GCUGGUa--AgCGCU-UUG- -5'
23060 3' -58 NC_005178.1 + 26070 0.67 0.424427
Target:  5'- gACGGCCUGGaCGACa--UCGCccgaGggGCg -3'
miRNA:   3'- -UGCCGGGCCgGCUGguaAGCG----CuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.