miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 3' -58 NC_005178.1 + 1558 0.68 0.352033
Target:  5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3'
miRNA:   3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 2380 0.71 0.216962
Target:  5'- uGCGGCCUGGCCGACa----GUGAc-- -3'
miRNA:   3'- -UGCCGGGCCGGCUGguaagCGCUuug -5'
23060 3' -58 NC_005178.1 + 2956 0.68 0.36929
Target:  5'- gAUGGCCCgcgauccucgcGGCCGcCCGagCGCGGAugGCu -3'
miRNA:   3'- -UGCCGGG-----------CCGGCuGGUaaGCGCUU--UG- -5'
23060 3' -58 NC_005178.1 + 3372 0.71 0.234281
Target:  5'- aGCGGCCCGccagcucGCCucguCCAUUCGCGu-GCg -3'
miRNA:   3'- -UGCCGGGC-------CGGcu--GGUAAGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 3635 0.66 0.463803
Target:  5'- cCGGCaCCaGGCCGccgagcaucgccGCCAggCGCGGcagGACg -3'
miRNA:   3'- uGCCG-GG-CCGGC------------UGGUaaGCGCU---UUG- -5'
23060 3' -58 NC_005178.1 + 4913 0.66 0.434085
Target:  5'- cCGGaaaUGGCCGACCAgaUCGCcgaGGAACu -3'
miRNA:   3'- uGCCgg-GCCGGCUGGUa-AGCG---CUUUG- -5'
23060 3' -58 NC_005178.1 + 5690 0.68 0.343621
Target:  5'- gGCGGUCUGGCgGACg--UUGCGAAu- -3'
miRNA:   3'- -UGCCGGGCCGgCUGguaAGCGCUUug -5'
23060 3' -58 NC_005178.1 + 5753 0.72 0.184595
Target:  5'- gGCGGCCUcgGGCaCGACCGUgUCGCccAGCa -3'
miRNA:   3'- -UGCCGGG--CCG-GCUGGUA-AGCGcuUUG- -5'
23060 3' -58 NC_005178.1 + 5872 0.78 0.074758
Target:  5'- cCGGCCCucGGCCGcCCAUcguccagCGCGAGACg -3'
miRNA:   3'- uGCCGGG--CCGGCuGGUAa------GCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 7124 0.69 0.303756
Target:  5'- aGCGGCCgGcGCCGcugaacaacCCcgUCGCGAuGCg -3'
miRNA:   3'- -UGCCGGgC-CGGCu--------GGuaAGCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 8313 0.72 0.184595
Target:  5'- cCGGCgCCGGCCGACuCGUagaUCGUGcuGACu -3'
miRNA:   3'- uGCCG-GGCCGGCUG-GUA---AGCGCu-UUG- -5'
23060 3' -58 NC_005178.1 + 8609 0.69 0.311436
Target:  5'- cACGGCgaUGGCCGuGCCGgaCGCGggGa -3'
miRNA:   3'- -UGCCGg-GCCGGC-UGGUaaGCGCuuUg -5'
23060 3' -58 NC_005178.1 + 8922 0.67 0.414898
Target:  5'- uCGGCCCGGCUu-CCGUgCGCuGggGg -3'
miRNA:   3'- uGCCGGGCCGGcuGGUAaGCG-CuuUg -5'
23060 3' -58 NC_005178.1 + 9175 0.73 0.170065
Target:  5'- cUGGaCCUGGCCG-CCAccCGCGAAGCc -3'
miRNA:   3'- uGCC-GGGCCGGCuGGUaaGCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 9691 0.66 0.463803
Target:  5'- gGCGGCCUggaGGUCGGCguagUUGCGuuGCa -3'
miRNA:   3'- -UGCCGGG---CCGGCUGgua-AGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 11212 0.66 0.484194
Target:  5'- --cGCCCGGCUGuucugcACCAUcgUCGCGuccAGCg -3'
miRNA:   3'- ugcCGGGCCGGC------UGGUA--AGCGCu--UUG- -5'
23060 3' -58 NC_005178.1 + 12110 0.67 0.396241
Target:  5'- -gGGCCUGGCCGAUgGg-CGCGccGCc -3'
miRNA:   3'- ugCCGGGCCGGCUGgUaaGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 12650 0.68 0.36929
Target:  5'- uACGGCUCGG-CGGCCgg-CGCGcuGGCg -3'
miRNA:   3'- -UGCCGGGCCgGCUGGuaaGCGCu-UUG- -5'
23060 3' -58 NC_005178.1 + 12678 0.67 0.378133
Target:  5'- gUGGCCUGGUugccugCGGCCugcUCGCGgcGCg -3'
miRNA:   3'- uGCCGGGCCG------GCUGGua-AGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 14449 0.7 0.274496
Target:  5'- uCGGCUCGGCCGAcgacaCCAUggaCGUGAu-- -3'
miRNA:   3'- uGCCGGGCCGGCU-----GGUAa--GCGCUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.