miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 3' -58 NC_005178.1 + 32167 1.09 0.000301
Target:  5'- gACGGCCCGGCCGACCAUUCGCGAAACg -3'
miRNA:   3'- -UGCCGGGCCGGCUGGUAAGCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 34334 0.68 0.360589
Target:  5'- cGCGGCUgaCGuuGCCGACCuugCGCaGGAACg -3'
miRNA:   3'- -UGCCGG--GC--CGGCUGGuaaGCG-CUUUG- -5'
23060 3' -58 NC_005178.1 + 32289 0.67 0.414898
Target:  5'- gGCGGCCuCGGCCaacugcuCCAgguuaacCGCGAcGCg -3'
miRNA:   3'- -UGCCGG-GCCGGcu-----GGUaa-----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 25325 0.66 0.484194
Target:  5'- uCGGCCCGcUUGGCCAggCGCuGGAAa -3'
miRNA:   3'- uGCCGGGCcGGCUGGUaaGCG-CUUUg -5'
23060 3' -58 NC_005178.1 + 8313 0.72 0.184595
Target:  5'- cCGGCgCCGGCCGACuCGUagaUCGUGcuGACu -3'
miRNA:   3'- uGCCG-GGCCGGCUG-GUA---AGCGCu-UUG- -5'
23060 3' -58 NC_005178.1 + 2380 0.71 0.216962
Target:  5'- uGCGGCCUGGCCGACa----GUGAc-- -3'
miRNA:   3'- -UGCCGGGCCGGCUGguaagCGCUuug -5'
23060 3' -58 NC_005178.1 + 21281 0.71 0.241149
Target:  5'- aACGGCUCGGCCGAgCCuUUCGaCGc--- -3'
miRNA:   3'- -UGCCGGGCCGGCU-GGuAAGC-GCuuug -5'
23060 3' -58 NC_005178.1 + 21494 0.7 0.247537
Target:  5'- -aGGUaCGGCCaGGCCAgcaCGCGGAACa -3'
miRNA:   3'- ugCCGgGCCGG-CUGGUaa-GCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 31708 0.69 0.299218
Target:  5'- aGCGGCCUGGCuugagggcguaauggCGGCCGUU-GCGGGu- -3'
miRNA:   3'- -UGCCGGGCCG---------------GCUGGUAAgCGCUUug -5'
23060 3' -58 NC_005178.1 + 1558 0.68 0.352033
Target:  5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3'
miRNA:   3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 8609 0.69 0.311436
Target:  5'- cACGGCgaUGGCCGuGCCGgaCGCGggGa -3'
miRNA:   3'- -UGCCGg-GCCGGC-UGGUaaGCGCuuUg -5'
23060 3' -58 NC_005178.1 + 19281 0.69 0.296223
Target:  5'- aACGGCCCaGGgCGAgCCcgUCGuCGAuGCu -3'
miRNA:   3'- -UGCCGGG-CCgGCU-GGuaAGC-GCUuUG- -5'
23060 3' -58 NC_005178.1 + 33977 0.76 0.10263
Target:  5'- gGCGGCCCauaaGGCCGACCGccucgUCGCGc--- -3'
miRNA:   3'- -UGCCGGG----CCGGCUGGUa----AGCGCuuug -5'
23060 3' -58 NC_005178.1 + 26759 0.69 0.319262
Target:  5'- cGCGGCUgGGCuCGGCCAggaUgGCGGcGGCg -3'
miRNA:   3'- -UGCCGGgCCG-GCUGGUa--AgCGCU-UUG- -5'
23060 3' -58 NC_005178.1 + 21008 0.74 0.148114
Target:  5'- uCGGCCCGGUCcuugaggucgaaGACCAggCGgGggGCg -3'
miRNA:   3'- uGCCGGGCCGG------------CUGGUaaGCgCuuUG- -5'
23060 3' -58 NC_005178.1 + 32625 0.69 0.291772
Target:  5'- gGCGGCCaguuccucggcgaucUGGUCGGCCAUUUcCGGGAUg -3'
miRNA:   3'- -UGCCGG---------------GCCGGCUGGUAAGcGCUUUG- -5'
23060 3' -58 NC_005178.1 + 27652 0.68 0.343621
Target:  5'- cGCGGCCCuaaguccuuGGCCGAgCGcacgccCGCGAcGCg -3'
miRNA:   3'- -UGCCGGG---------CCGGCUgGUaa----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 15778 0.67 0.396241
Target:  5'- cGCcGCCUGGCUGGCguUggaaaGCGGAGCg -3'
miRNA:   3'- -UGcCGGGCCGGCUGguAag---CGCUUUG- -5'
23060 3' -58 NC_005178.1 + 9175 0.73 0.170065
Target:  5'- cUGGaCCUGGCCG-CCAccCGCGAAGCc -3'
miRNA:   3'- uGCC-GGGCCGGCuGGUaaGCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 3372 0.71 0.234281
Target:  5'- aGCGGCCCGccagcucGCCucguCCAUUCGCGu-GCg -3'
miRNA:   3'- -UGCCGGGC-------CGGcu--GGUAAGCGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.