Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23060 | 3' | -58 | NC_005178.1 | + | 12678 | 0.67 | 0.378133 |
Target: 5'- gUGGCCUGGUugccugCGGCCugcUCGCGgcGCg -3' miRNA: 3'- uGCCGGGCCG------GCUGGua-AGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8922 | 0.67 | 0.414898 |
Target: 5'- uCGGCCCGGCUu-CCGUgCGCuGggGg -3' miRNA: 3'- uGCCGGGCCGGcuGGUAaGCG-CuuUg -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 26070 | 0.67 | 0.424427 |
Target: 5'- gACGGCCUGGaCGACa--UCGCccgaGggGCg -3' miRNA: 3'- -UGCCGGGCCgGCUGguaAGCG----CuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 33571 | 0.67 | 0.378133 |
Target: 5'- gACGGCaucgaGGCCGACgugcuggUCGCGAccGGCg -3' miRNA: 3'- -UGCCGgg---CCGGCUGgua----AGCGCU--UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 23455 | 0.68 | 0.352033 |
Target: 5'- gACGGCCaGGgCGcCCgg-CGCGAAGCc -3' miRNA: 3'- -UGCCGGgCCgGCuGGuaaGCGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 2956 | 0.68 | 0.36929 |
Target: 5'- gAUGGCCCgcgauccucgcGGCCGcCCGagCGCGGAugGCu -3' miRNA: 3'- -UGCCGGG-----------CCGGCuGGUaaGCGCUU--UG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12650 | 0.68 | 0.36929 |
Target: 5'- uACGGCUCGG-CGGCCgg-CGCGcuGGCg -3' miRNA: 3'- -UGCCGGGCCgGCUGGuaaGCGCu-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 34334 | 0.68 | 0.360589 |
Target: 5'- cGCGGCUgaCGuuGCCGACCuugCGCaGGAACg -3' miRNA: 3'- -UGCCGG--GC--CGGCUGGuaaGCG-CUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 1558 | 0.68 | 0.352033 |
Target: 5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3' miRNA: 3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 27652 | 0.68 | 0.343621 |
Target: 5'- cGCGGCCCuaaguccuuGGCCGAgCGcacgccCGCGAcGCg -3' miRNA: 3'- -UGCCGGG---------CCGGCUgGUaa----GCGCUuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 29790 | 0.68 | 0.360589 |
Target: 5'- aGCGaacaaCCCGGCCGACUugcUCGCcAAGCu -3' miRNA: 3'- -UGCc----GGGCCGGCUGGua-AGCGcUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 16277 | 0.68 | 0.352033 |
Target: 5'- -aGGCUCGGCCGAgCCGUUCaUGGc-- -3' miRNA: 3'- ugCCGGGCCGGCU-GGUAAGcGCUuug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 5690 | 0.68 | 0.343621 |
Target: 5'- gGCGGUCUGGCgGACg--UUGCGAAu- -3' miRNA: 3'- -UGCCGGGCCGgCUGguaAGCGCUUug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 32625 | 0.69 | 0.291772 |
Target: 5'- gGCGGCCaguuccucggcgaucUGGUCGGCCAUUUcCGGGAUg -3' miRNA: 3'- -UGCCGG---------------GCCGGCUGGUAAGcGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 19281 | 0.69 | 0.296223 |
Target: 5'- aACGGCCCaGGgCGAgCCcgUCGuCGAuGCu -3' miRNA: 3'- -UGCCGGG-CCgGCU-GGuaAGC-GCUuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 31708 | 0.69 | 0.299218 |
Target: 5'- aGCGGCCUGGCuugagggcguaauggCGGCCGUU-GCGGGu- -3' miRNA: 3'- -UGCCGGGCCG---------------GCUGGUAAgCGCUUug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 31329 | 0.69 | 0.30681 |
Target: 5'- cACGGCCCgacgacugaacccacGGCUcGCCAUgUCGCGGAu- -3' miRNA: 3'- -UGCCGGG---------------CCGGcUGGUA-AGCGCUUug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8609 | 0.69 | 0.311436 |
Target: 5'- cACGGCgaUGGCCGuGCCGgaCGCGggGa -3' miRNA: 3'- -UGCCGg-GCCGGC-UGGUaaGCGCuuUg -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 26759 | 0.69 | 0.319262 |
Target: 5'- cGCGGCUgGGCuCGGCCAggaUgGCGGcGGCg -3' miRNA: 3'- -UGCCGGgCCG-GCUGGUa--AgCGCU-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 7124 | 0.69 | 0.303756 |
Target: 5'- aGCGGCCgGcGCCGcugaacaacCCcgUCGCGAuGCg -3' miRNA: 3'- -UGCCGGgC-CGGCu--------GGuaAGCGCUuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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