Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23060 | 3' | -58 | NC_005178.1 | + | 26759 | 0.69 | 0.319262 |
Target: 5'- cGCGGCUgGGCuCGGCCAggaUgGCGGcGGCg -3' miRNA: 3'- -UGCCGGgCCG-GCUGGUa--AgCGCU-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 23455 | 0.68 | 0.352033 |
Target: 5'- gACGGCCaGGgCGcCCgg-CGCGAAGCc -3' miRNA: 3'- -UGCCGGgCCgGCuGGuaaGCGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 27652 | 0.68 | 0.343621 |
Target: 5'- cGCGGCCCuaaguccuuGGCCGAgCGcacgccCGCGAcGCg -3' miRNA: 3'- -UGCCGGG---------CCGGCUgGUaa----GCGCUuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 1558 | 0.68 | 0.352033 |
Target: 5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3' miRNA: 3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 34334 | 0.68 | 0.360589 |
Target: 5'- cGCGGCUgaCGuuGCCGACCuugCGCaGGAACg -3' miRNA: 3'- -UGCCGG--GC--CGGCUGGuaaGCG-CUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 5690 | 0.68 | 0.343621 |
Target: 5'- gGCGGUCUGGCgGACg--UUGCGAAu- -3' miRNA: 3'- -UGCCGGGCCGgCUGguaAGCGCUUug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 16277 | 0.68 | 0.352033 |
Target: 5'- -aGGCUCGGCCGAgCCGUUCaUGGc-- -3' miRNA: 3'- ugCCGGGCCGGCU-GGUAAGcGCUuug -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 29790 | 0.68 | 0.360589 |
Target: 5'- aGCGaacaaCCCGGCCGACUugcUCGCcAAGCu -3' miRNA: 3'- -UGCc----GGGCCGGCUGGua-AGCGcUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12650 | 0.68 | 0.36929 |
Target: 5'- uACGGCUCGG-CGGCCgg-CGCGcuGGCg -3' miRNA: 3'- -UGCCGGGCCgGCUGGuaaGCGCu-UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 2956 | 0.68 | 0.36929 |
Target: 5'- gAUGGCCCgcgauccucgcGGCCGcCCGagCGCGGAugGCu -3' miRNA: 3'- -UGCCGGG-----------CCGGCuGGUaaGCGCUU--UG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12678 | 0.67 | 0.378133 |
Target: 5'- gUGGCCUGGUugccugCGGCCugcUCGCGgcGCg -3' miRNA: 3'- uGCCGGGCCG------GCUGGua-AGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 27881 | 0.67 | 0.424427 |
Target: 5'- gACcGCCuCGGCCGGCUcg--GCGAAGCc -3' miRNA: 3'- -UGcCGG-GCCGGCUGGuaagCGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 19351 | 0.67 | 0.424427 |
Target: 5'- uUGGCCCGGCCcauagacGCCAc-CGCGcAGCc -3' miRNA: 3'- uGCCGGGCCGGc------UGGUaaGCGCuUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 32289 | 0.67 | 0.414898 |
Target: 5'- gGCGGCCuCGGCCaacugcuCCAgguuaacCGCGAcGCg -3' miRNA: 3'- -UGCCGG-GCCGGcu-----GGUaa-----GCGCUuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 15778 | 0.67 | 0.396241 |
Target: 5'- cGCcGCCUGGCUGGCguUggaaaGCGGAGCg -3' miRNA: 3'- -UGcCGGGCCGGCUGguAag---CGCUUUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 33571 | 0.67 | 0.378133 |
Target: 5'- gACGGCaucgaGGCCGACgugcuggUCGCGAccGGCg -3' miRNA: 3'- -UGCCGgg---CCGGCUGgua----AGCGCU--UUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 12110 | 0.67 | 0.396241 |
Target: 5'- -gGGCCUGGCCGAUgGg-CGCGccGCc -3' miRNA: 3'- ugCCGGGCCGGCUGgUaaGCGCuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 8922 | 0.67 | 0.414898 |
Target: 5'- uCGGCCCGGCUu-CCGUgCGCuGggGg -3' miRNA: 3'- uGCCGGGCCGGcuGGUAaGCG-CuuUg -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 26070 | 0.67 | 0.424427 |
Target: 5'- gACGGCCUGGaCGACa--UCGCccgaGggGCg -3' miRNA: 3'- -UGCCGGGCCgGCUGguaAGCG----CuuUG- -5' |
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23060 | 3' | -58 | NC_005178.1 | + | 25325 | 0.66 | 0.484194 |
Target: 5'- uCGGCCCGcUUGGCCAggCGCuGGAAa -3' miRNA: 3'- uGCCGGGCcGGCUGGUaaGCG-CUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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