miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 3' -58 NC_005178.1 + 12110 0.67 0.396241
Target:  5'- -gGGCCUGGCCGAUgGg-CGCGccGCc -3'
miRNA:   3'- ugCCGGGCCGGCUGgUaaGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 15778 0.67 0.396241
Target:  5'- cGCcGCCUGGCUGGCguUggaaaGCGGAGCg -3'
miRNA:   3'- -UGcCGGGCCGGCUGguAag---CGCUUUG- -5'
23060 3' -58 NC_005178.1 + 33571 0.67 0.378133
Target:  5'- gACGGCaucgaGGCCGACgugcuggUCGCGAccGGCg -3'
miRNA:   3'- -UGCCGgg---CCGGCUGgua----AGCGCU--UUG- -5'
23060 3' -58 NC_005178.1 + 12678 0.67 0.378133
Target:  5'- gUGGCCUGGUugccugCGGCCugcUCGCGgcGCg -3'
miRNA:   3'- uGCCGGGCCG------GCUGGua-AGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 2956 0.68 0.36929
Target:  5'- gAUGGCCCgcgauccucgcGGCCGcCCGagCGCGGAugGCu -3'
miRNA:   3'- -UGCCGGG-----------CCGGCuGGUaaGCGCUU--UG- -5'
23060 3' -58 NC_005178.1 + 12650 0.68 0.36929
Target:  5'- uACGGCUCGG-CGGCCgg-CGCGcuGGCg -3'
miRNA:   3'- -UGCCGGGCCgGCUGGuaaGCGCu-UUG- -5'
23060 3' -58 NC_005178.1 + 29790 0.68 0.360589
Target:  5'- aGCGaacaaCCCGGCCGACUugcUCGCcAAGCu -3'
miRNA:   3'- -UGCc----GGGCCGGCUGGua-AGCGcUUUG- -5'
23060 3' -58 NC_005178.1 + 34334 0.68 0.360589
Target:  5'- cGCGGCUgaCGuuGCCGACCuugCGCaGGAACg -3'
miRNA:   3'- -UGCCGG--GC--CGGCUGGuaaGCG-CUUUG- -5'
23060 3' -58 NC_005178.1 + 23455 0.68 0.352033
Target:  5'- gACGGCCaGGgCGcCCgg-CGCGAAGCc -3'
miRNA:   3'- -UGCCGGgCCgGCuGGuaaGCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 16277 0.68 0.352033
Target:  5'- -aGGCUCGGCCGAgCCGUUCaUGGc-- -3'
miRNA:   3'- ugCCGGGCCGGCU-GGUAAGcGCUuug -5'
23060 3' -58 NC_005178.1 + 1558 0.68 0.352033
Target:  5'- uCGGCCUGGCCGGaagUCGgcaGCGuuGCg -3'
miRNA:   3'- uGCCGGGCCGGCU---GGUaagCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 27652 0.68 0.343621
Target:  5'- cGCGGCCCuaaguccuuGGCCGAgCGcacgccCGCGAcGCg -3'
miRNA:   3'- -UGCCGGG---------CCGGCUgGUaa----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 5690 0.68 0.343621
Target:  5'- gGCGGUCUGGCgGACg--UUGCGAAu- -3'
miRNA:   3'- -UGCCGGGCCGgCUGguaAGCGCUUug -5'
23060 3' -58 NC_005178.1 + 26759 0.69 0.319262
Target:  5'- cGCGGCUgGGCuCGGCCAggaUgGCGGcGGCg -3'
miRNA:   3'- -UGCCGGgCCG-GCUGGUa--AgCGCU-UUG- -5'
23060 3' -58 NC_005178.1 + 8609 0.69 0.311436
Target:  5'- cACGGCgaUGGCCGuGCCGgaCGCGggGa -3'
miRNA:   3'- -UGCCGg-GCCGGC-UGGUaaGCGCuuUg -5'
23060 3' -58 NC_005178.1 + 31329 0.69 0.30681
Target:  5'- cACGGCCCgacgacugaacccacGGCUcGCCAUgUCGCGGAu- -3'
miRNA:   3'- -UGCCGGG---------------CCGGcUGGUA-AGCGCUUug -5'
23060 3' -58 NC_005178.1 + 7124 0.69 0.303756
Target:  5'- aGCGGCCgGcGCCGcugaacaacCCcgUCGCGAuGCg -3'
miRNA:   3'- -UGCCGGgC-CGGCu--------GGuaAGCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 31708 0.69 0.299218
Target:  5'- aGCGGCCUGGCuugagggcguaauggCGGCCGUU-GCGGGu- -3'
miRNA:   3'- -UGCCGGGCCG---------------GCUGGUAAgCGCUUug -5'
23060 3' -58 NC_005178.1 + 19281 0.69 0.296223
Target:  5'- aACGGCCCaGGgCGAgCCcgUCGuCGAuGCu -3'
miRNA:   3'- -UGCCGGG-CCgGCU-GGuaAGC-GCUuUG- -5'
23060 3' -58 NC_005178.1 + 32625 0.69 0.291772
Target:  5'- gGCGGCCaguuccucggcgaucUGGUCGGCCAUUUcCGGGAUg -3'
miRNA:   3'- -UGCCGG---------------GCCGGCUGGUAAGcGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.