miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 5' -53.3 NC_005178.1 + 35494 0.66 0.724708
Target:  5'- aCGGUAgcGCGUAC--CCGGCGaaGGUCu -3'
miRNA:   3'- -GCUAUaaCGCGUGuaGGUCGCg-CCAG- -5'
23060 5' -53.3 NC_005178.1 + 1495 0.66 0.713525
Target:  5'- aGGUAUaGCGCGgG-CCGGCuGCGGa- -3'
miRNA:   3'- gCUAUAaCGCGUgUaGGUCG-CGCCag -5'
23060 5' -53.3 NC_005178.1 + 12552 0.66 0.713525
Target:  5'- aCGGUGUcccaGUGCA-GUCCGGCGCagaggccguauuGGUCg -3'
miRNA:   3'- -GCUAUAa---CGCGUgUAGGUCGCG------------CCAG- -5'
23060 5' -53.3 NC_005178.1 + 14713 0.66 0.711277
Target:  5'- gCGGcg--GCGCGCuccugguagaacUCCAGCGCGG-Cg -3'
miRNA:   3'- -GCUauaaCGCGUGu-----------AGGUCGCGCCaG- -5'
23060 5' -53.3 NC_005178.1 + 23093 0.66 0.702253
Target:  5'- ----cUUGCGCucgGCAUCCAGgauCGCGGg- -3'
miRNA:   3'- gcuauAACGCG---UGUAGGUC---GCGCCag -5'
23060 5' -53.3 NC_005178.1 + 35047 0.66 0.690906
Target:  5'- uGGUcg-GCGCcuCggCCAGCGCGGcCa -3'
miRNA:   3'- gCUAuaaCGCGu-GuaGGUCGCGCCaG- -5'
23060 5' -53.3 NC_005178.1 + 31361 0.67 0.656543
Target:  5'- ------gGCGCAUAgcCCGGCGCugGGUCa -3'
miRNA:   3'- gcuauaaCGCGUGUa-GGUCGCG--CCAG- -5'
23060 5' -53.3 NC_005178.1 + 10105 0.67 0.633489
Target:  5'- gCGAUGg-GCGCugG-CCaggAGCGCGGUg -3'
miRNA:   3'- -GCUAUaaCGCGugUaGG---UCGCGCCAg -5'
23060 5' -53.3 NC_005178.1 + 11080 0.67 0.61043
Target:  5'- uGAUAggUGCGCAUugccuaccUCCGGgGCGGa- -3'
miRNA:   3'- gCUAUa-ACGCGUGu-------AGGUCgCGCCag -5'
23060 5' -53.3 NC_005178.1 + 35934 0.68 0.597777
Target:  5'- cCGcAUGUUGCGCugGgaugacuUCCuGCGCcaaccGGUCg -3'
miRNA:   3'- -GC-UAUAACGCGugU-------AGGuCGCG-----CCAG- -5'
23060 5' -53.3 NC_005178.1 + 32257 0.68 0.57488
Target:  5'- cCGAUGUaGCGCGCAUCUguuucauGGCGCu--- -3'
miRNA:   3'- -GCUAUAaCGCGUGUAGG-------UCGCGccag -5'
23060 5' -53.3 NC_005178.1 + 36306 0.68 0.557839
Target:  5'- cCGuUGUUGCGCGCGUaguugcuaccgucgcUCGGCGCG-UCg -3'
miRNA:   3'- -GCuAUAACGCGUGUA---------------GGUCGCGCcAG- -5'
23060 5' -53.3 NC_005178.1 + 24911 0.72 0.331694
Target:  5'- aCGAgcuuccagUGCuccgucaGCACGUCCAGCGCaauGGUCg -3'
miRNA:   3'- -GCUaua-----ACG-------CGUGUAGGUCGCG---CCAG- -5'
23060 5' -53.3 NC_005178.1 + 20954 0.76 0.194205
Target:  5'- gGGUGUUGCGguCGguggUCAGgGCGGUCa -3'
miRNA:   3'- gCUAUAACGCguGUa---GGUCgCGCCAG- -5'
23060 5' -53.3 NC_005178.1 + 32132 1.11 0.000653
Target:  5'- cCGAUAUUGCGCACAUCCAGCGCGGUCg -3'
miRNA:   3'- -GCUAUAACGCGUGUAGGUCGCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.