miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 1695 0.67 0.548618
Target:  5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3'
miRNA:   3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 5933 0.67 0.548618
Target:  5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3'
miRNA:   3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 13087 0.67 0.548618
Target:  5'- -aGGCUGGccaGCAGCUGCACCuucacGGCggGCu -3'
miRNA:   3'- acUUGACUa--UGUCGGCGUGG-----CCGa-CG- -5'
23061 3' -54.5 NC_005178.1 + 13014 0.67 0.537469
Target:  5'- gGAACUGGgucaccaggcCGGCCaGCACCuGGC-GCg -3'
miRNA:   3'- aCUUGACUau--------GUCGG-CGUGG-CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 18399 0.67 0.537469
Target:  5'- --cGCUGAUGC-GCgGCAUC-GCUGCu -3'
miRNA:   3'- acuUGACUAUGuCGgCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 20011 0.67 0.537469
Target:  5'- aGAGCaGAacggcCAGcCCGCGCCcGCUGCc -3'
miRNA:   3'- aCUUGaCUau---GUC-GGCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 8648 0.68 0.5264
Target:  5'- cGAGCgcgUGGUGCAGuuGgGgCCGGCUcgGCc -3'
miRNA:   3'- aCUUG---ACUAUGUCggCgU-GGCCGA--CG- -5'
23061 3' -54.5 NC_005178.1 + 14091 0.68 0.515417
Target:  5'- gUGAuCUGGUGCGuaCuCACCGGCcGCa -3'
miRNA:   3'- -ACUuGACUAUGUcgGcGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 5732 0.68 0.515417
Target:  5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3'
miRNA:   3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 30883 0.68 0.515417
Target:  5'- -cGGCUGAUGC-GCCGCguagacGCCGGCccagGUc -3'
miRNA:   3'- acUUGACUAUGuCGGCG------UGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 30270 0.68 0.504528
Target:  5'- -----cGGUACAGCgGCGgCGGCaGCg -3'
miRNA:   3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 7278 0.68 0.503444
Target:  5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3'
miRNA:   3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 29456 0.68 0.493739
Target:  5'- gGAucGCggaGAUAgCAGCUGCGCUcguaggGGCUGCu -3'
miRNA:   3'- aCU--UGa--CUAU-GUCGGCGUGG------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 11988 0.68 0.493739
Target:  5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3'
miRNA:   3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 5407 0.68 0.483057
Target:  5'- cGGGCUc--GgGGCCGCACCGGUguacaGCu -3'
miRNA:   3'- aCUUGAcuaUgUCGGCGUGGCCGa----CG- -5'
23061 3' -54.5 NC_005178.1 + 19992 0.69 0.441508
Target:  5'- cGcGCUcGAUcacuGCGGCgGCACUGGCgGCa -3'
miRNA:   3'- aCuUGA-CUA----UGUCGgCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 12474 0.69 0.441508
Target:  5'- -cGACcaAUACGGCCucuGCGCCGGaCUGCa -3'
miRNA:   3'- acUUGacUAUGUCGG---CGUGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 28154 0.69 0.431439
Target:  5'- gGGGCUGA--CGGUCgGCGCCucGGCUGUa -3'
miRNA:   3'- aCUUGACUauGUCGG-CGUGG--CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 4508 0.69 0.421506
Target:  5'- cGAGCUGGccgaGCGGCaaCGCuCCGGcCUGCc -3'
miRNA:   3'- aCUUGACUa---UGUCG--GCGuGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 18574 0.69 0.421506
Target:  5'- aGAAUcgGGUGCGcGCCGCGCCccuucgccgcucGcGCUGCa -3'
miRNA:   3'- aCUUGa-CUAUGU-CGGCGUGG------------C-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.