miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 12758 0.71 0.347265
Target:  5'- cGAGCuUGAUACGcGCCGCGagcaGGCcGCa -3'
miRNA:   3'- aCUUG-ACUAUGU-CGGCGUgg--CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 13014 0.67 0.537469
Target:  5'- gGAACUGGgucaccaggcCGGCCaGCACCuGGC-GCg -3'
miRNA:   3'- aCUUGACUau--------GUCGG-CGUGG-CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 13087 0.67 0.548618
Target:  5'- -aGGCUGGccaGCAGCUGCACCuucacGGCggGCu -3'
miRNA:   3'- acUUGACUa--UGUCGGCGUGG-----CCGa-CG- -5'
23061 3' -54.5 NC_005178.1 + 13674 0.71 0.321941
Target:  5'- cGAACUGA-ACGGCguuUGCuCgGGCUGCa -3'
miRNA:   3'- aCUUGACUaUGUCG---GCGuGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 13778 0.67 0.571122
Target:  5'- aUGGACUGGauugcuggugccUACGGCgGCAUCaaGGCgGCc -3'
miRNA:   3'- -ACUUGACU------------AUGUCGgCGUGG--CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 14003 0.66 0.605258
Target:  5'- cGAGCUGGUggaccacccggACGGCCaGCACgaagccauugCGGCgccGCg -3'
miRNA:   3'- aCUUGACUA-----------UGUCGG-CGUG----------GCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 14091 0.68 0.515417
Target:  5'- gUGAuCUGGUGCGuaCuCACCGGCcGCa -3'
miRNA:   3'- -ACUuGACUAUGUcgGcGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 15091 0.66 0.638471
Target:  5'- cGAGCUGGUGaagcgcuCGGCCaagGCgGGCUGUc -3'
miRNA:   3'- aCUUGACUAU-------GUCGGcg-UGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 16865 0.77 0.137485
Target:  5'- gGAugUGAU-CAGCCGCggagguagcgagGCCGaGCUGCu -3'
miRNA:   3'- aCUugACUAuGUCGGCG------------UGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 17347 0.74 0.22212
Target:  5'- -cAGCUcg-GCAGcCCGCGCCGGCUGg -3'
miRNA:   3'- acUUGAcuaUGUC-GGCGUGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 17427 0.73 0.268307
Target:  5'- uUGGuCUGGUAgaucguuucCAGCCgGCGCgGGCUGCc -3'
miRNA:   3'- -ACUuGACUAU---------GUCGG-CGUGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 18058 0.7 0.402059
Target:  5'- gGAGCUGGgcacccuggGCAGCCGCAuaGGUgaUGUc -3'
miRNA:   3'- aCUUGACUa--------UGUCGGCGUggCCG--ACG- -5'
23061 3' -54.5 NC_005178.1 + 18154 0.7 0.411711
Target:  5'- cGGGCUGGgcCAGgCGCugCGGCa-- -3'
miRNA:   3'- aCUUGACUauGUCgGCGugGCCGacg -5'
23061 3' -54.5 NC_005178.1 + 18331 0.66 0.605258
Target:  5'- gGAGCUGGUGgaccgcgaggucCAGgaGCGCCuGGCgGCa -3'
miRNA:   3'- aCUUGACUAU------------GUCggCGUGG-CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 18399 0.67 0.537469
Target:  5'- --cGCUGAUGC-GCgGCAUC-GCUGCu -3'
miRNA:   3'- acuUGACUAUGuCGgCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 18574 0.69 0.421506
Target:  5'- aGAAUcgGGUGCGcGCCGCGCCccuucgccgcucGcGCUGCa -3'
miRNA:   3'- aCUUGa-CUAUGU-CGGCGUGG------------C-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 19992 0.69 0.441508
Target:  5'- cGcGCUcGAUcacuGCGGCgGCACUGGCgGCa -3'
miRNA:   3'- aCuUGA-CUA----UGUCGgCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 20011 0.67 0.537469
Target:  5'- aGAGCaGAacggcCAGcCCGCGCCcGCUGCc -3'
miRNA:   3'- aCUUGaCUau---GUC-GGCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 21290 0.66 0.605258
Target:  5'- cGA--UGAUGCGGCCG-GCCgGGgaGCg -3'
miRNA:   3'- aCUugACUAUGUCGGCgUGG-CCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 21685 0.66 0.639617
Target:  5'- gGAGCUGA-GCcGCCGaguaACCGGCc-- -3'
miRNA:   3'- aCUUGACUaUGuCGGCg---UGGCCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.