Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23061 | 3' | -54.5 | NC_005178.1 | + | 1495 | 0.75 | 0.193419 |
Target: 5'- -----aGGUAUAGCgCGgGCCGGCUGCg -3' miRNA: 3'- acuugaCUAUGUCG-GCgUGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 1695 | 0.67 | 0.548618 |
Target: 5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3' miRNA: 3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 2848 | 0.73 | 0.254368 |
Target: 5'- aGAcCUGAUgAUGGcCCGCACCGGCUa- -3' miRNA: 3'- aCUuGACUA-UGUC-GGCGUGGCCGAcg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 4508 | 0.69 | 0.421506 |
Target: 5'- cGAGCUGGccgaGCGGCaaCGCuCCGGcCUGCc -3' miRNA: 3'- aCUUGACUa---UGUCG--GCGuGGCC-GACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 4939 | 0.67 | 0.582459 |
Target: 5'- gGAACUGGccgccaGCGGCCGC-CC-GCUGa -3' miRNA: 3'- aCUUGACUa-----UGUCGGCGuGGcCGACg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5407 | 0.68 | 0.483057 |
Target: 5'- cGGGCUc--GgGGCCGCACCGGUguacaGCu -3' miRNA: 3'- aCUUGAcuaUgUCGGCGUGGCCGa----CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5732 | 0.68 | 0.515417 |
Target: 5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3' miRNA: 3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5933 | 0.67 | 0.548618 |
Target: 5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3' miRNA: 3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 7186 | 0.74 | 0.228279 |
Target: 5'- gGggUUGuu-CAGCgGCGCCGGCcGCu -3' miRNA: 3'- aCuuGACuauGUCGgCGUGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 7278 | 0.68 | 0.503444 |
Target: 5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3' miRNA: 3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 8648 | 0.68 | 0.5264 |
Target: 5'- cGAGCgcgUGGUGCAGuuGgGgCCGGCUcgGCc -3' miRNA: 3'- aCUUG---ACUAUGUCggCgU-GGCCGA--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 8855 | 0.72 | 0.282856 |
Target: 5'- cGAcCUGGUGCGGCU-CAgCGGUUGCa -3' miRNA: 3'- aCUuGACUAUGUCGGcGUgGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 9039 | 0.72 | 0.290361 |
Target: 5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3' miRNA: 3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 9566 | 0.72 | 0.282856 |
Target: 5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3' miRNA: 3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 10122 | 0.71 | 0.356017 |
Target: 5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3' miRNA: 3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 10331 | 0.66 | 0.6167 |
Target: 5'- cGGGCgcgGAgggGCgaAG-CGCGCCGgGCUGCg -3' miRNA: 3'- aCUUGa--CUa--UG--UCgGCGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 11004 | 0.66 | 0.6167 |
Target: 5'- gGGGCagGAgGCgGGCCGCGCCGGaucgacucgGCg -3' miRNA: 3'- aCUUGa-CUaUG-UCGGCGUGGCCga-------CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 11769 | 0.66 | 0.6167 |
Target: 5'- cGAGCcaugggGGUuCcGCCGCagGCCGGcCUGCa -3' miRNA: 3'- aCUUGa-----CUAuGuCGGCG--UGGCC-GACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 11988 | 0.68 | 0.493739 |
Target: 5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3' miRNA: 3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 12474 | 0.69 | 0.441508 |
Target: 5'- -cGACcaAUACGGCCucuGCGCCGGaCUGCa -3' miRNA: 3'- acUUGacUAUGUCGG---CGUGGCC-GACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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