miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 1495 0.75 0.193419
Target:  5'- -----aGGUAUAGCgCGgGCCGGCUGCg -3'
miRNA:   3'- acuugaCUAUGUCG-GCgUGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 1695 0.67 0.548618
Target:  5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3'
miRNA:   3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 2848 0.73 0.254368
Target:  5'- aGAcCUGAUgAUGGcCCGCACCGGCUa- -3'
miRNA:   3'- aCUuGACUA-UGUC-GGCGUGGCCGAcg -5'
23061 3' -54.5 NC_005178.1 + 4508 0.69 0.421506
Target:  5'- cGAGCUGGccgaGCGGCaaCGCuCCGGcCUGCc -3'
miRNA:   3'- aCUUGACUa---UGUCG--GCGuGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 4939 0.67 0.582459
Target:  5'- gGAACUGGccgccaGCGGCCGC-CC-GCUGa -3'
miRNA:   3'- aCUUGACUa-----UGUCGGCGuGGcCGACg -5'
23061 3' -54.5 NC_005178.1 + 5407 0.68 0.483057
Target:  5'- cGGGCUc--GgGGCCGCACCGGUguacaGCu -3'
miRNA:   3'- aCUUGAcuaUgUCGGCGUGGCCGa----CG- -5'
23061 3' -54.5 NC_005178.1 + 5732 0.68 0.515417
Target:  5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3'
miRNA:   3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 5933 0.67 0.548618
Target:  5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3'
miRNA:   3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 7186 0.74 0.228279
Target:  5'- gGggUUGuu-CAGCgGCGCCGGCcGCu -3'
miRNA:   3'- aCuuGACuauGUCGgCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 7278 0.68 0.503444
Target:  5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3'
miRNA:   3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 8648 0.68 0.5264
Target:  5'- cGAGCgcgUGGUGCAGuuGgGgCCGGCUcgGCc -3'
miRNA:   3'- aCUUG---ACUAUGUCggCgU-GGCCGA--CG- -5'
23061 3' -54.5 NC_005178.1 + 8855 0.72 0.282856
Target:  5'- cGAcCUGGUGCGGCU-CAgCGGUUGCa -3'
miRNA:   3'- aCUuGACUAUGUCGGcGUgGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 9039 0.72 0.290361
Target:  5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3'
miRNA:   3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5'
23061 3' -54.5 NC_005178.1 + 9566 0.72 0.282856
Target:  5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3'
miRNA:   3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 10122 0.71 0.356017
Target:  5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3'
miRNA:   3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 10331 0.66 0.6167
Target:  5'- cGGGCgcgGAgggGCgaAG-CGCGCCGgGCUGCg -3'
miRNA:   3'- aCUUGa--CUa--UG--UCgGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 11004 0.66 0.6167
Target:  5'- gGGGCagGAgGCgGGCCGCGCCGGaucgacucgGCg -3'
miRNA:   3'- aCUUGa-CUaUG-UCGGCGUGGCCga-------CG- -5'
23061 3' -54.5 NC_005178.1 + 11769 0.66 0.6167
Target:  5'- cGAGCcaugggGGUuCcGCCGCagGCCGGcCUGCa -3'
miRNA:   3'- aCUUGa-----CUAuGuCGGCG--UGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 11988 0.68 0.493739
Target:  5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3'
miRNA:   3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 12474 0.69 0.441508
Target:  5'- -cGACcaAUACGGCCucuGCGCCGGaCUGCa -3'
miRNA:   3'- acUUGacUAUGUCGG---CGUGGCC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.