miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 14003 0.66 0.605258
Target:  5'- cGAGCUGGUggaccacccggACGGCCaGCACgaagccauugCGGCgccGCg -3'
miRNA:   3'- aCUUGACUA-----------UGUCGG-CGUG----------GCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 9566 0.72 0.282856
Target:  5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3'
miRNA:   3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 10122 0.71 0.356017
Target:  5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3'
miRNA:   3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 9039 0.72 0.290361
Target:  5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3'
miRNA:   3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5'
23061 3' -54.5 NC_005178.1 + 31312 0.7 0.402059
Target:  5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3'
miRNA:   3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 18399 0.67 0.537469
Target:  5'- --cGCUGAUGC-GCgGCAUC-GCUGCu -3'
miRNA:   3'- acuUGACUAUGuCGgCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 1695 0.67 0.548618
Target:  5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3'
miRNA:   3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 4939 0.67 0.582459
Target:  5'- gGAACUGGccgccaGCGGCCGC-CC-GCUGa -3'
miRNA:   3'- aCUUGACUa-----UGUCGGCGuGGcCGACg -5'
23061 3' -54.5 NC_005178.1 + 30772 0.66 0.593841
Target:  5'- gGAGCUGAaccaggACAuCCGC-CUGGCaGCg -3'
miRNA:   3'- aCUUGACUa-----UGUcGGCGuGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 18331 0.66 0.605258
Target:  5'- gGAGCUGGUGgaccgcgaggucCAGgaGCGCCuGGCgGCa -3'
miRNA:   3'- aCUUGACUAU------------GUCggCGUGG-CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 17347 0.74 0.22212
Target:  5'- -cAGCUcg-GCAGcCCGCGCCGGCUGg -3'
miRNA:   3'- acUUGAcuaUGUC-GGCGUGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 11769 0.66 0.6167
Target:  5'- cGAGCcaugggGGUuCcGCCGCagGCCGGcCUGCa -3'
miRNA:   3'- aCUUGa-----CUAuGuCGGCG--UGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 32192 0.66 0.6167
Target:  5'- cGAGCUGG-AC-GCCGaCACCGaGCguuugGCc -3'
miRNA:   3'- aCUUGACUaUGuCGGC-GUGGC-CGa----CG- -5'
23061 3' -54.5 NC_005178.1 + 10331 0.66 0.6167
Target:  5'- cGGGCgcgGAgggGCgaAG-CGCGCCGgGCUGCg -3'
miRNA:   3'- aCUUGa--CUa--UG--UCgGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 25168 0.66 0.628156
Target:  5'- cGAGCUGAUggcggucaaccAUGGCUuCGCCGGggGCu -3'
miRNA:   3'- aCUUGACUA-----------UGUCGGcGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 15091 0.66 0.638471
Target:  5'- cGAGCUGGUGaagcgcuCGGCCaagGCgGGCUGUc -3'
miRNA:   3'- aCUUGACUAU-------GUCGGcg-UGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 35535 0.66 0.639617
Target:  5'- gUGAACUGGgcgaagcGCGaCCGCAUUGGCcagGCc -3'
miRNA:   3'- -ACUUGACUa------UGUcGGCGUGGCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 28305 0.66 0.649925
Target:  5'- gGAGCUGccGgGGCCGCuggagugGCUGGUgGCg -3'
miRNA:   3'- aCUUGACuaUgUCGGCG-------UGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 35337 0.66 0.649925
Target:  5'- gUGGACgaaacGGUcuACAGCCaggGCGugacgcuccaggcCCGGCUGCu -3'
miRNA:   3'- -ACUUGa----CUA--UGUCGG---CGU-------------GGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 24216 0.66 0.65107
Target:  5'- cGAACUGGUcaucaccgACAGCgcgaGCAgcCCGGC-GCc -3'
miRNA:   3'- aCUUGACUA--------UGUCGg---CGU--GGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.