miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 30772 0.66 0.593841
Target:  5'- gGAGCUGAaccaggACAuCCGC-CUGGCaGCg -3'
miRNA:   3'- aCUUGACUa-----UGUcGGCGuGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 7278 0.68 0.503444
Target:  5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3'
miRNA:   3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 30270 0.68 0.504528
Target:  5'- -----cGGUACAGCgGCGgCGGCaGCg -3'
miRNA:   3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 5732 0.68 0.515417
Target:  5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3'
miRNA:   3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 14091 0.68 0.515417
Target:  5'- gUGAuCUGGUGCGuaCuCACCGGCcGCa -3'
miRNA:   3'- -ACUuGACUAUGUcgGcGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 20011 0.67 0.537469
Target:  5'- aGAGCaGAacggcCAGcCCGCGCCcGCUGCc -3'
miRNA:   3'- aCUUGaCUau---GUC-GGCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 18399 0.67 0.537469
Target:  5'- --cGCUGAUGC-GCgGCAUC-GCUGCu -3'
miRNA:   3'- acuUGACUAUGuCGgCGUGGcCGACG- -5'
23061 3' -54.5 NC_005178.1 + 1695 0.67 0.548618
Target:  5'- cGAugUGcgugGCGGCCGCGuggcuuaCGGCcGCg -3'
miRNA:   3'- aCUugACua--UGUCGGCGUg------GCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 4939 0.67 0.582459
Target:  5'- gGAACUGGccgccaGCGGCCGC-CC-GCUGa -3'
miRNA:   3'- aCUUGACUa-----UGUCGGCGuGGcCGACg -5'
23061 3' -54.5 NC_005178.1 + 11988 0.68 0.493739
Target:  5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3'
miRNA:   3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 12474 0.69 0.441508
Target:  5'- -cGACcaAUACGGCCucuGCGCCGGaCUGCa -3'
miRNA:   3'- acUUGacUAUGUCGG---CGUGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 28154 0.69 0.431439
Target:  5'- gGGGCUGA--CGGUCgGCGCCucGGCUGUa -3'
miRNA:   3'- aCUUGACUauGUCGG-CGUGG--CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 17347 0.74 0.22212
Target:  5'- -cAGCUcg-GCAGcCCGCGCCGGCUGg -3'
miRNA:   3'- acUUGAcuaUGUC-GGCGUGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 2848 0.73 0.254368
Target:  5'- aGAcCUGAUgAUGGcCCGCACCGGCUa- -3'
miRNA:   3'- aCUuGACUA-UGUC-GGCGUGGCCGAcg -5'
23061 3' -54.5 NC_005178.1 + 9566 0.72 0.282856
Target:  5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3'
miRNA:   3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 9039 0.72 0.290361
Target:  5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3'
miRNA:   3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5'
23061 3' -54.5 NC_005178.1 + 10122 0.71 0.356017
Target:  5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3'
miRNA:   3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 31312 0.7 0.402059
Target:  5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3'
miRNA:   3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 34962 0.7 0.411711
Target:  5'- cUGGACgUGAgcgcguccUACuuGGCCGCGCUGGCcgagGCg -3'
miRNA:   3'- -ACUUG-ACU--------AUG--UCGGCGUGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 4508 0.69 0.421506
Target:  5'- cGAGCUGGccgaGCGGCaaCGCuCCGGcCUGCc -3'
miRNA:   3'- aCUUGACUa---UGUCG--GCGuGGCC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.