Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23061 | 3' | -54.5 | NC_005178.1 | + | 32484 | 1.11 | 0.000479 |
Target: 5'- cUGAACUGAUACAGCCGCACCGGCUGCc -3' miRNA: 3'- -ACUUGACUAUGUCGGCGUGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 13014 | 0.67 | 0.537469 |
Target: 5'- gGAACUGGgucaccaggcCGGCCaGCACCuGGC-GCg -3' miRNA: 3'- aCUUGACUau--------GUCGG-CGUGG-CCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5933 | 0.67 | 0.548618 |
Target: 5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3' miRNA: 3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 21685 | 0.66 | 0.639617 |
Target: 5'- gGAGCUGA-GCcGCCGaguaACCGGCc-- -3' miRNA: 3'- aCUUGACUaUGuCGGCg---UGGCCGacg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 17427 | 0.73 | 0.268307 |
Target: 5'- uUGGuCUGGUAgaucguuucCAGCCgGCGCgGGCUGCc -3' miRNA: 3'- -ACUuGACUAU---------GUCGG-CGUGgCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 31022 | 0.73 | 0.275504 |
Target: 5'- -aGACUGAUGcCGGUCGUACCuGGgUGCu -3' miRNA: 3'- acUUGACUAU-GUCGGCGUGG-CCgACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 13674 | 0.71 | 0.321941 |
Target: 5'- cGAACUGA-ACGGCguuUGCuCgGGCUGCa -3' miRNA: 3'- aCUUGACUaUGUCG---GCGuGgCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 12758 | 0.71 | 0.347265 |
Target: 5'- cGAGCuUGAUACGcGCCGCGagcaGGCcGCa -3' miRNA: 3'- aCUUG-ACUAUGU-CGGCGUgg--CCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18574 | 0.69 | 0.421506 |
Target: 5'- aGAAUcgGGUGCGcGCCGCGCCccuucgccgcucGcGCUGCa -3' miRNA: 3'- aCUUGa-CUAUGU-CGGCGUGG------------C-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 8648 | 0.68 | 0.5264 |
Target: 5'- cGAGCgcgUGGUGCAGuuGgGgCCGGCUcgGCc -3' miRNA: 3'- aCUUG---ACUAUGUCggCgU-GGCCGA--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5407 | 0.68 | 0.483057 |
Target: 5'- cGGGCUc--GgGGCCGCACCGGUguacaGCu -3' miRNA: 3'- aCUUGAcuaUgUCGGCGUGGCCGa----CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18154 | 0.7 | 0.411711 |
Target: 5'- cGGGCUGGgcCAGgCGCugCGGCa-- -3' miRNA: 3'- aCUUGACUauGUCgGCGugGCCGacg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 1495 | 0.75 | 0.193419 |
Target: 5'- -----aGGUAUAGCgCGgGCCGGCUGCg -3' miRNA: 3'- acuugaCUAUGUCG-GCgUGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 29456 | 0.68 | 0.493739 |
Target: 5'- gGAucGCggaGAUAgCAGCUGCGCUcguaggGGCUGCu -3' miRNA: 3'- aCU--UGa--CUAU-GUCGGCGUGG------CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 29218 | 0.74 | 0.22212 |
Target: 5'- aUGGGCUGAUuccACAGCaGCGCCugaacccgcgGGCUGUa -3' miRNA: 3'- -ACUUGACUA---UGUCGgCGUGG----------CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18058 | 0.7 | 0.402059 |
Target: 5'- gGAGCUGGgcacccuggGCAGCCGCAuaGGUgaUGUc -3' miRNA: 3'- aCUUGACUa--------UGUCGGCGUggCCG--ACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 30883 | 0.68 | 0.515417 |
Target: 5'- -cGGCUGAUGC-GCCGCguagacGCCGGCccagGUc -3' miRNA: 3'- acUUGACUAUGuCGGCG------UGGCCGa---CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 13087 | 0.67 | 0.548618 |
Target: 5'- -aGGCUGGccaGCAGCUGCACCuucacGGCggGCu -3' miRNA: 3'- acUUGACUa--UGUCGGCGUGG-----CCGa-CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 7186 | 0.74 | 0.228279 |
Target: 5'- gGggUUGuu-CAGCgGCGCCGGCcGCu -3' miRNA: 3'- aCuuGACuauGUCGgCGUGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 8855 | 0.72 | 0.282856 |
Target: 5'- cGAcCUGGUGCGGCU-CAgCGGUUGCa -3' miRNA: 3'- aCUuGACUAUGUCGGcGUgGCCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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