Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23061 | 3' | -54.5 | NC_005178.1 | + | 19992 | 0.69 | 0.441508 |
Target: 5'- cGcGCUcGAUcacuGCGGCgGCACUGGCgGCa -3' miRNA: 3'- aCuUGA-CUA----UGUCGgCGUGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 21290 | 0.66 | 0.605258 |
Target: 5'- cGA--UGAUGCGGCCG-GCCgGGgaGCg -3' miRNA: 3'- aCUugACUAUGUCGGCgUGG-CCgaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5933 | 0.67 | 0.548618 |
Target: 5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3' miRNA: 3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18574 | 0.69 | 0.421506 |
Target: 5'- aGAAUcgGGUGCGcGCCGCGCCccuucgccgcucGcGCUGCa -3' miRNA: 3'- aCUUGa-CUAUGU-CGGCGUGG------------C-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 21685 | 0.66 | 0.639617 |
Target: 5'- gGAGCUGA-GCcGCCGaguaACCGGCc-- -3' miRNA: 3'- aCUUGACUaUGuCGGCg---UGGCCGacg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18154 | 0.7 | 0.411711 |
Target: 5'- cGGGCUGGgcCAGgCGCugCGGCa-- -3' miRNA: 3'- aCUUGACUauGUCgGCGugGCCGacg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 18058 | 0.7 | 0.402059 |
Target: 5'- gGAGCUGGgcacccuggGCAGCCGCAuaGGUgaUGUc -3' miRNA: 3'- aCUUGACUa--------UGUCGGCGUggCCG--ACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 31312 | 0.7 | 0.402059 |
Target: 5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3' miRNA: 3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 28305 | 0.66 | 0.649925 |
Target: 5'- gGAGCUGccGgGGCCGCuggagugGCUGGUgGCg -3' miRNA: 3'- aCUUGACuaUgUCGGCG-------UGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 35535 | 0.66 | 0.639617 |
Target: 5'- gUGAACUGGgcgaagcGCGaCCGCAUUGGCcagGCc -3' miRNA: 3'- -ACUUGACUa------UGUcGGCGUGGCCGa--CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 5732 | 0.68 | 0.515417 |
Target: 5'- gGAGCaGAU-C-GCCGCAUCGGUgGCg -3' miRNA: 3'- aCUUGaCUAuGuCGGCGUGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 30270 | 0.68 | 0.504528 |
Target: 5'- -----cGGUACAGCgGCGgCGGCaGCg -3' miRNA: 3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 7278 | 0.68 | 0.503444 |
Target: 5'- aGAGCc--UGCGcaccuucaacgacGCCGC-CCGGCUGCu -3' miRNA: 3'- aCUUGacuAUGU-------------CGGCGuGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 11988 | 0.68 | 0.493739 |
Target: 5'- ---cCUGGUGCgGGCUgGUACCGgGCUGCu -3' miRNA: 3'- acuuGACUAUG-UCGG-CGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 10122 | 0.71 | 0.356017 |
Target: 5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3' miRNA: 3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 11769 | 0.66 | 0.6167 |
Target: 5'- cGAGCcaugggGGUuCcGCCGCagGCCGGcCUGCa -3' miRNA: 3'- aCUUGa-----CUAuGuCGGCG--UGGCC-GACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 32192 | 0.66 | 0.6167 |
Target: 5'- cGAGCUGG-AC-GCCGaCACCGaGCguuugGCc -3' miRNA: 3'- aCUUGACUaUGuCGGC-GUGGC-CGa----CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 10331 | 0.66 | 0.6167 |
Target: 5'- cGGGCgcgGAgggGCgaAG-CGCGCCGgGCUGCg -3' miRNA: 3'- aCUUGa--CUa--UG--UCgGCGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 25168 | 0.66 | 0.628156 |
Target: 5'- cGAGCUGAUggcggucaaccAUGGCUuCGCCGGggGCu -3' miRNA: 3'- aCUUGACUA-----------UGUCGGcGUGGCCgaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 15091 | 0.66 | 0.638471 |
Target: 5'- cGAGCUGGUGaagcgcuCGGCCaagGCgGGCUGUc -3' miRNA: 3'- aCUUGACUAU-------GUCGGcg-UGgCCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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