miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 5933 0.67 0.548618
Target:  5'- cUGGAC-GAUggGCGGCCGaggGCCGGUguaGCg -3'
miRNA:   3'- -ACUUGaCUA--UGUCGGCg--UGGCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 13778 0.67 0.571122
Target:  5'- aUGGACUGGauugcuggugccUACGGCgGCAUCaaGGCgGCc -3'
miRNA:   3'- -ACUUGACU------------AUGUCGgCGUGG--CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 26870 0.67 0.582459
Target:  5'- --cGCUGGccACAGCgCGUcCCGGCUGg -3'
miRNA:   3'- acuUGACUa-UGUCG-GCGuGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 35515 0.66 0.604115
Target:  5'- cGGGCgGGUACGGCUuaccuugGCGCCcggucagcgucaGGCUGUc -3'
miRNA:   3'- aCUUGaCUAUGUCGG-------CGUGG------------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 21290 0.66 0.605258
Target:  5'- cGA--UGAUGCGGCCG-GCCgGGgaGCg -3'
miRNA:   3'- aCUugACUAUGUCGGCgUGG-CCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 27414 0.66 0.6167
Target:  5'- -uGGCUGAU-CAGUU-CGCCGcGCUGCg -3'
miRNA:   3'- acUUGACUAuGUCGGcGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 11004 0.66 0.6167
Target:  5'- gGGGCagGAgGCgGGCCGCGCCGGaucgacucgGCg -3'
miRNA:   3'- aCUUGa-CUaUG-UCGGCGUGGCCga-------CG- -5'
23061 3' -54.5 NC_005178.1 + 28305 0.66 0.649925
Target:  5'- gGAGCUGccGgGGCCGCuggagugGCUGGUgGCg -3'
miRNA:   3'- aCUUGACuaUgUCGGCG-------UGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 24216 0.66 0.65107
Target:  5'- cGAACUGGUcaucaccgACAGCgcgaGCAgcCCGGC-GCc -3'
miRNA:   3'- aCUUGACUA--------UGUCGg---CGU--GGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 35337 0.66 0.649925
Target:  5'- gUGGACgaaacGGUcuACAGCCaggGCGugacgcuccaggcCCGGCUGCu -3'
miRNA:   3'- -ACUUGa----CUA--UGUCGG---CGU-------------GGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 14091 0.68 0.515417
Target:  5'- gUGAuCUGGUGCGuaCuCACCGGCcGCa -3'
miRNA:   3'- -ACUuGACUAUGUcgGcGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 17347 0.74 0.22212
Target:  5'- -cAGCUcg-GCAGcCCGCGCCGGCUGg -3'
miRNA:   3'- acUUGAcuaUGUC-GGCGUGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 2848 0.73 0.254368
Target:  5'- aGAcCUGAUgAUGGcCCGCACCGGCUa- -3'
miRNA:   3'- aCUuGACUA-UGUC-GGCGUGGCCGAcg -5'
23061 3' -54.5 NC_005178.1 + 9566 0.72 0.282856
Target:  5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3'
miRNA:   3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 9039 0.72 0.290361
Target:  5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3'
miRNA:   3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5'
23061 3' -54.5 NC_005178.1 + 10122 0.71 0.356017
Target:  5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3'
miRNA:   3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 31312 0.7 0.402059
Target:  5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3'
miRNA:   3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 34962 0.7 0.411711
Target:  5'- cUGGACgUGAgcgcguccUACuuGGCCGCGCUGGCcgagGCg -3'
miRNA:   3'- -ACUUG-ACU--------AUG--UCGGCGUGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 4508 0.69 0.421506
Target:  5'- cGAGCUGGccgaGCGGCaaCGCuCCGGcCUGCc -3'
miRNA:   3'- aCUUGACUa---UGUCG--GCGuGGCC-GACG- -5'
23061 3' -54.5 NC_005178.1 + 28154 0.69 0.431439
Target:  5'- gGGGCUGA--CGGUCgGCGCCucGGCUGUa -3'
miRNA:   3'- aCUUGACUauGUCGG-CGUGG--CCGACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.