miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 32484 1.11 0.000479
Target:  5'- cUGAACUGAUACAGCCGCACCGGCUGCc -3'
miRNA:   3'- -ACUUGACUAUGUCGGCGUGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 16865 0.77 0.137485
Target:  5'- gGAugUGAU-CAGCCGCggagguagcgagGCCGaGCUGCu -3'
miRNA:   3'- aCUugACUAuGUCGGCG------------UGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 1495 0.75 0.193419
Target:  5'- -----aGGUAUAGCgCGgGCCGGCUGCg -3'
miRNA:   3'- acuugaCUAUGUCG-GCgUGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 29218 0.74 0.22212
Target:  5'- aUGGGCUGAUuccACAGCaGCGCCugaacccgcgGGCUGUa -3'
miRNA:   3'- -ACUUGACUA---UGUCGgCGUGG----------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 17347 0.74 0.22212
Target:  5'- -cAGCUcg-GCAGcCCGCGCCGGCUGg -3'
miRNA:   3'- acUUGAcuaUGUC-GGCGUGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 7186 0.74 0.228279
Target:  5'- gGggUUGuu-CAGCgGCGCCGGCcGCu -3'
miRNA:   3'- aCuuGACuauGUCGgCGUGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 2848 0.73 0.254368
Target:  5'- aGAcCUGAUgAUGGcCCGCACCGGCUa- -3'
miRNA:   3'- aCUuGACUA-UGUC-GGCGUGGCCGAcg -5'
23061 3' -54.5 NC_005178.1 + 17427 0.73 0.268307
Target:  5'- uUGGuCUGGUAgaucguuucCAGCCgGCGCgGGCUGCc -3'
miRNA:   3'- -ACUuGACUAU---------GUCGG-CGUGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 31022 0.73 0.275504
Target:  5'- -aGACUGAUGcCGGUCGUACCuGGgUGCu -3'
miRNA:   3'- acUUGACUAU-GUCGGCGUGG-CCgACG- -5'
23061 3' -54.5 NC_005178.1 + 9566 0.72 0.282856
Target:  5'- cGAGCgcGAUGCc-CUGCGCCGcGCUGCg -3'
miRNA:   3'- aCUUGa-CUAUGucGGCGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 8855 0.72 0.282856
Target:  5'- cGAcCUGGUGCGGCU-CAgCGGUUGCa -3'
miRNA:   3'- aCUuGACUAUGUCGGcGUgGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 9039 0.72 0.290361
Target:  5'- cGAcCUGGaGCAauGCCGCGCCGcGCUcGCg -3'
miRNA:   3'- aCUuGACUaUGU--CGGCGUGGC-CGA-CG- -5'
23061 3' -54.5 NC_005178.1 + 13674 0.71 0.321941
Target:  5'- cGAACUGA-ACGGCguuUGCuCgGGCUGCa -3'
miRNA:   3'- aCUUGACUaUGUCG---GCGuGgCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 12758 0.71 0.347265
Target:  5'- cGAGCuUGAUACGcGCCGCGagcaGGCcGCa -3'
miRNA:   3'- aCUUG-ACUAUGU-CGGCGUgg--CCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 10122 0.71 0.356017
Target:  5'- cGAgugGCUGGacgACAGCCaGCucuACCGGCUGa -3'
miRNA:   3'- aCU---UGACUa--UGUCGG-CG---UGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 31312 0.7 0.402059
Target:  5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3'
miRNA:   3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 18058 0.7 0.402059
Target:  5'- gGAGCUGGgcacccuggGCAGCCGCAuaGGUgaUGUc -3'
miRNA:   3'- aCUUGACUa--------UGUCGGCGUggCCG--ACG- -5'
23061 3' -54.5 NC_005178.1 + 18154 0.7 0.411711
Target:  5'- cGGGCUGGgcCAGgCGCugCGGCa-- -3'
miRNA:   3'- aCUUGACUauGUCgGCGugGCCGacg -5'
23061 3' -54.5 NC_005178.1 + 34962 0.7 0.411711
Target:  5'- cUGGACgUGAgcgcguccUACuuGGCCGCGCUGGCcgagGCg -3'
miRNA:   3'- -ACUUG-ACU--------AUG--UCGGCGUGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 18574 0.69 0.421506
Target:  5'- aGAAUcgGGUGCGcGCCGCGCCccuucgccgcucGcGCUGCa -3'
miRNA:   3'- aCUUGa-CUAUGU-CGGCGUGG------------C-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.