miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23061 3' -54.5 NC_005178.1 + 35535 0.66 0.639617
Target:  5'- gUGAACUGGgcgaagcGCGaCCGCAUUGGCcagGCc -3'
miRNA:   3'- -ACUUGACUa------UGUcGGCGUGGCCGa--CG- -5'
23061 3' -54.5 NC_005178.1 + 35515 0.66 0.604115
Target:  5'- cGGGCgGGUACGGCUuaccuugGCGCCcggucagcgucaGGCUGUc -3'
miRNA:   3'- aCUUGaCUAUGUCGG-------CGUGG------------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 35337 0.66 0.649925
Target:  5'- gUGGACgaaacGGUcuACAGCCaggGCGugacgcuccaggcCCGGCUGCu -3'
miRNA:   3'- -ACUUGa----CUA--UGUCGG---CGU-------------GGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 34962 0.7 0.411711
Target:  5'- cUGGACgUGAgcgcguccUACuuGGCCGCGCUGGCcgagGCg -3'
miRNA:   3'- -ACUUG-ACU--------AUG--UCGGCGUGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 32484 1.11 0.000479
Target:  5'- cUGAACUGAUACAGCCGCACCGGCUGCc -3'
miRNA:   3'- -ACUUGACUAUGUCGGCGUGGCCGACG- -5'
23061 3' -54.5 NC_005178.1 + 32192 0.66 0.6167
Target:  5'- cGAGCUGG-AC-GCCGaCACCGaGCguuugGCc -3'
miRNA:   3'- aCUUGACUaUGuCGGC-GUGGC-CGa----CG- -5'
23061 3' -54.5 NC_005178.1 + 31312 0.7 0.402059
Target:  5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3'
miRNA:   3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 31022 0.73 0.275504
Target:  5'- -aGACUGAUGcCGGUCGUACCuGGgUGCu -3'
miRNA:   3'- acUUGACUAU-GUCGGCGUGG-CCgACG- -5'
23061 3' -54.5 NC_005178.1 + 30883 0.68 0.515417
Target:  5'- -cGGCUGAUGC-GCCGCguagacGCCGGCccagGUc -3'
miRNA:   3'- acUUGACUAUGuCGGCG------UGGCCGa---CG- -5'
23061 3' -54.5 NC_005178.1 + 30772 0.66 0.593841
Target:  5'- gGAGCUGAaccaggACAuCCGC-CUGGCaGCg -3'
miRNA:   3'- aCUUGACUa-----UGUcGGCGuGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 30270 0.68 0.504528
Target:  5'- -----cGGUACAGCgGCGgCGGCaGCg -3'
miRNA:   3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 29456 0.68 0.493739
Target:  5'- gGAucGCggaGAUAgCAGCUGCGCUcguaggGGCUGCu -3'
miRNA:   3'- aCU--UGa--CUAU-GUCGGCGUGG------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 29218 0.74 0.22212
Target:  5'- aUGGGCUGAUuccACAGCaGCGCCugaacccgcgGGCUGUa -3'
miRNA:   3'- -ACUUGACUA---UGUCGgCGUGG----------CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 28305 0.66 0.649925
Target:  5'- gGAGCUGccGgGGCCGCuggagugGCUGGUgGCg -3'
miRNA:   3'- aCUUGACuaUgUCGGCG-------UGGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 28154 0.69 0.431439
Target:  5'- gGGGCUGA--CGGUCgGCGCCucGGCUGUa -3'
miRNA:   3'- aCUUGACUauGUCGG-CGUGG--CCGACG- -5'
23061 3' -54.5 NC_005178.1 + 27414 0.66 0.6167
Target:  5'- -uGGCUGAU-CAGUU-CGCCGcGCUGCg -3'
miRNA:   3'- acUUGACUAuGUCGGcGUGGC-CGACG- -5'
23061 3' -54.5 NC_005178.1 + 26870 0.67 0.582459
Target:  5'- --cGCUGGccACAGCgCGUcCCGGCUGg -3'
miRNA:   3'- acuUGACUa-UGUCG-GCGuGGCCGACg -5'
23061 3' -54.5 NC_005178.1 + 25168 0.66 0.628156
Target:  5'- cGAGCUGAUggcggucaaccAUGGCUuCGCCGGggGCu -3'
miRNA:   3'- aCUUGACUA-----------UGUCGGcGUGGCCgaCG- -5'
23061 3' -54.5 NC_005178.1 + 24216 0.66 0.65107
Target:  5'- cGAACUGGUcaucaccgACAGCgcgaGCAgcCCGGC-GCc -3'
miRNA:   3'- aCUUGACUA--------UGUCGg---CGU--GGCCGaCG- -5'
23061 3' -54.5 NC_005178.1 + 21685 0.66 0.639617
Target:  5'- gGAGCUGA-GCcGCCGaguaACCGGCc-- -3'
miRNA:   3'- aCUUGACUaUGuCGGCg---UGGCCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.