Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23061 | 3' | -54.5 | NC_005178.1 | + | 24216 | 0.66 | 0.65107 |
Target: 5'- cGAACUGGUcaucaccgACAGCgcgaGCAgcCCGGC-GCc -3' miRNA: 3'- aCUUGACUA--------UGUCGg---CGU--GGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 25168 | 0.66 | 0.628156 |
Target: 5'- cGAGCUGAUggcggucaaccAUGGCUuCGCCGGggGCu -3' miRNA: 3'- aCUUGACUA-----------UGUCGGcGUGGCCgaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 26870 | 0.67 | 0.582459 |
Target: 5'- --cGCUGGccACAGCgCGUcCCGGCUGg -3' miRNA: 3'- acuUGACUa-UGUCG-GCGuGGCCGACg -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 27414 | 0.66 | 0.6167 |
Target: 5'- -uGGCUGAU-CAGUU-CGCCGcGCUGCg -3' miRNA: 3'- acUUGACUAuGUCGGcGUGGC-CGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 28154 | 0.69 | 0.431439 |
Target: 5'- gGGGCUGA--CGGUCgGCGCCucGGCUGUa -3' miRNA: 3'- aCUUGACUauGUCGG-CGUGG--CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 28305 | 0.66 | 0.649925 |
Target: 5'- gGAGCUGccGgGGCCGCuggagugGCUGGUgGCg -3' miRNA: 3'- aCUUGACuaUgUCGGCG-------UGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 29218 | 0.74 | 0.22212 |
Target: 5'- aUGGGCUGAUuccACAGCaGCGCCugaacccgcgGGCUGUa -3' miRNA: 3'- -ACUUGACUA---UGUCGgCGUGG----------CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 29456 | 0.68 | 0.493739 |
Target: 5'- gGAucGCggaGAUAgCAGCUGCGCUcguaggGGCUGCu -3' miRNA: 3'- aCU--UGa--CUAU-GUCGGCGUGG------CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 30270 | 0.68 | 0.504528 |
Target: 5'- -----cGGUACAGCgGCGgCGGCaGCg -3' miRNA: 3'- acuugaCUAUGUCGgCGUgGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 30772 | 0.66 | 0.593841 |
Target: 5'- gGAGCUGAaccaggACAuCCGC-CUGGCaGCg -3' miRNA: 3'- aCUUGACUa-----UGUcGGCGuGGCCGaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 30883 | 0.68 | 0.515417 |
Target: 5'- -cGGCUGAUGC-GCCGCguagacGCCGGCccagGUc -3' miRNA: 3'- acUUGACUAUGuCGGCG------UGGCCGa---CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 31022 | 0.73 | 0.275504 |
Target: 5'- -aGACUGAUGcCGGUCGUACCuGGgUGCu -3' miRNA: 3'- acUUGACUAU-GUCGGCGUGG-CCgACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 31312 | 0.7 | 0.402059 |
Target: 5'- cGGGCU-AUGCGccuggcGCCGCGCCGGgaGUu -3' miRNA: 3'- aCUUGAcUAUGU------CGGCGUGGCCgaCG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 32192 | 0.66 | 0.6167 |
Target: 5'- cGAGCUGG-AC-GCCGaCACCGaGCguuugGCc -3' miRNA: 3'- aCUUGACUaUGuCGGC-GUGGC-CGa----CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 32484 | 1.11 | 0.000479 |
Target: 5'- cUGAACUGAUACAGCCGCACCGGCUGCc -3' miRNA: 3'- -ACUUGACUAUGUCGGCGUGGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 34962 | 0.7 | 0.411711 |
Target: 5'- cUGGACgUGAgcgcguccUACuuGGCCGCGCUGGCcgagGCg -3' miRNA: 3'- -ACUUG-ACU--------AUG--UCGGCGUGGCCGa---CG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 35337 | 0.66 | 0.649925 |
Target: 5'- gUGGACgaaacGGUcuACAGCCaggGCGugacgcuccaggcCCGGCUGCu -3' miRNA: 3'- -ACUUGa----CUA--UGUCGG---CGU-------------GGCCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 35515 | 0.66 | 0.604115 |
Target: 5'- cGGGCgGGUACGGCUuaccuugGCGCCcggucagcgucaGGCUGUc -3' miRNA: 3'- aCUUGaCUAUGUCGG-------CGUGG------------CCGACG- -5' |
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23061 | 3' | -54.5 | NC_005178.1 | + | 35535 | 0.66 | 0.639617 |
Target: 5'- gUGAACUGGgcgaagcGCGaCCGCAUUGGCcagGCc -3' miRNA: 3'- -ACUUGACUa------UGUcGGCGUGGCCGa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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