miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23062 5' -51.9 NC_005178.1 + 10798 0.66 0.785369
Target:  5'- ---cCUGGCCgaGCCCA----GCCGCg -3'
miRNA:   3'- guuaGACCGGa-UGGGUucuuUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 34470 0.66 0.751966
Target:  5'- cCGGUCUucuCCUGagugauuUCCAGGAGGCCGCUg -3'
miRNA:   3'- -GUUAGAcc-GGAU-------GGGUUCUUUGGCGA- -5'
23062 5' -51.9 NC_005178.1 + 33256 0.66 0.742001
Target:  5'- gGGUCcaUGGCCUACCuCAccAGAccuGAUCGCc -3'
miRNA:   3'- gUUAG--ACCGGAUGG-GU--UCU---UUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 23282 0.67 0.73081
Target:  5'- cCGAUCUGGCC-ACCCuuGAcgAACaGCg -3'
miRNA:   3'- -GUUAGACCGGaUGGGuuCU--UUGgCGa -5'
23062 5' -51.9 NC_005178.1 + 20229 0.67 0.685065
Target:  5'- aCGGUCUGgaGCCUcucgcACgCCGAGcgGCCGCg -3'
miRNA:   3'- -GUUAGAC--CGGA-----UG-GGUUCuuUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 32729 0.68 0.638398
Target:  5'- ---aCUGGCCgACCguGGAuagcuGCCGCa -3'
miRNA:   3'- guuaGACCGGaUGGguUCUu----UGGCGa -5'
23062 5' -51.9 NC_005178.1 + 17330 0.68 0.626684
Target:  5'- --cUUUGGCCU--CCAGGAucGGCCGCa -3'
miRNA:   3'- guuAGACCGGAugGGUUCU--UUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 18264 0.69 0.59162
Target:  5'- -cAUUUGGCCcgGCCCAuAGAcgccACCGCg -3'
miRNA:   3'- guUAGACCGGa-UGGGU-UCUu---UGGCGa -5'
23062 5' -51.9 NC_005178.1 + 31976 0.69 0.590456
Target:  5'- ---cCUGGUCUAUgCAcugcgcggccagcAGAAGCCGCUa -3'
miRNA:   3'- guuaGACCGGAUGgGU-------------UCUUUGGCGA- -5'
23062 5' -51.9 NC_005178.1 + 28950 0.69 0.579995
Target:  5'- -----aGGCCUGCCCA----GCCGCg -3'
miRNA:   3'- guuagaCCGGAUGGGUucuuUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 34796 0.69 0.576517
Target:  5'- uCGAUCcGGCCgACCCGaacgacgguuucagGGAuGCCGCg -3'
miRNA:   3'- -GUUAGaCCGGaUGGGU--------------UCUuUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 28432 0.69 0.568419
Target:  5'- ---cCUGGCCgccACCCGcGAAGCCGa- -3'
miRNA:   3'- guuaGACCGGa--UGGGUuCUUUGGCga -5'
23062 5' -51.9 NC_005178.1 + 26677 0.7 0.545453
Target:  5'- ---cCUGGgC-ACCCuGGAAACCGCUu -3'
miRNA:   3'- guuaGACCgGaUGGGuUCUUUGGCGA- -5'
23062 5' -51.9 NC_005178.1 + 11819 0.7 0.511599
Target:  5'- ---cCUGGCC-GCCCuGGuGACCGCg -3'
miRNA:   3'- guuaGACCGGaUGGGuUCuUUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 4529 0.73 0.385825
Target:  5'- --cUCcGGCCUGCCCAucgagccGGAcGCCGCc -3'
miRNA:   3'- guuAGaCCGGAUGGGU-------UCUuUGGCGa -5'
23062 5' -51.9 NC_005178.1 + 31429 0.83 0.089144
Target:  5'- cCGAUCUGGCCUgauAUCCAgcugcuccAGGAACCGCUg -3'
miRNA:   3'- -GUUAGACCGGA---UGGGU--------UCUUUGGCGA- -5'
23062 5' -51.9 NC_005178.1 + 32756 1.09 0.001268
Target:  5'- cCAAUCUGGCCUACCCAAGAAACCGCUg -3'
miRNA:   3'- -GUUAGACCGGAUGGGUUCUUUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.