Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23064 | 3' | -52.5 | NC_005178.1 | + | 4191 | 1.11 | 0.001001 |
Target: 5'- cUCUUCGACCAGCACUGACCGAAGACGg -3' miRNA: 3'- -AGAAGCUGGUCGUGACUGGCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 25650 | 0.73 | 0.372265 |
Target: 5'- -gUUCGACCGGCAgCaGGCCGAgcuGGGCa -3' miRNA: 3'- agAAGCUGGUCGU-GaCUGGCU---UCUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 13040 | 0.73 | 0.390792 |
Target: 5'- ---cUGGCCAGC-CUGGCCGAugccuacaacaAGACGg -3' miRNA: 3'- agaaGCUGGUCGuGACUGGCU-----------UCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 34982 | 0.72 | 0.409911 |
Target: 5'- --cUUGGCC-GCGCUGGCCG-AGGCGc -3' miRNA: 3'- agaAGCUGGuCGUGACUGGCuUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 33359 | 0.72 | 0.419686 |
Target: 5'- gUCUUCGGUCAGUGCUGGUCGAAGAg- -3' miRNA: 3'- -AGAAGCUGGUCGUGACUGGCUUCUgc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 23491 | 0.71 | 0.46431 |
Target: 5'- --cUCGGCCggcugcucaaGGCACUGACCGGcuggguuccugaucaGGGCGu -3' miRNA: 3'- agaAGCUGG----------UCGUGACUGGCU---------------UCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 2575 | 0.7 | 0.524444 |
Target: 5'- --cUCGGCCAGCGC-GGCCaaguAGGACGc -3' miRNA: 3'- agaAGCUGGUCGUGaCUGGc---UUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 20945 | 0.7 | 0.556742 |
Target: 5'- --gUUGACCGGCACcugacgcccagcuUGACCaGGGGCGg -3' miRNA: 3'- agaAGCUGGUCGUG-------------ACUGGcUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 321 | 0.69 | 0.573676 |
Target: 5'- gCUUCGACCcaggcugucagguccGGCGCUGuGCCGGuaGCGa -3' miRNA: 3'- aGAAGCUGG---------------UCGUGAC-UGGCUucUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 10707 | 0.69 | 0.580484 |
Target: 5'- cUCgUUGaACCAGCccaACgGGCCGAAGACa -3' miRNA: 3'- -AGaAGC-UGGUCG---UGaCUGGCUUCUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 36076 | 0.69 | 0.603287 |
Target: 5'- ---cUGACCAGUucGCUGACCu-GGGCGg -3' miRNA: 3'- agaaGCUGGUCG--UGACUGGcuUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 30648 | 0.69 | 0.614734 |
Target: 5'- cUCagCGGCgAGCAgCUGGaCGAAGACGg -3' miRNA: 3'- -AGaaGCUGgUCGU-GACUgGCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 27507 | 0.68 | 0.626197 |
Target: 5'- ---gCGAUgGGCGCUGGCCaGGAGcGCGg -3' miRNA: 3'- agaaGCUGgUCGUGACUGG-CUUC-UGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 6902 | 0.68 | 0.637666 |
Target: 5'- gUCUUCGuCCAGCuGCUcgccGCUGAGGugGc -3' miRNA: 3'- -AGAAGCuGGUCG-UGAc---UGGCUUCugC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 28290 | 0.68 | 0.637666 |
Target: 5'- ---gUGACCGGCGCUGcgggagcuGCCGggGcCGc -3' miRNA: 3'- agaaGCUGGUCGUGAC--------UGGCuuCuGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 10963 | 0.68 | 0.637666 |
Target: 5'- ---gCGGCCccAGCgaaucccuuGCUGAUCGAGGGCGg -3' miRNA: 3'- agaaGCUGG--UCG---------UGACUGGCUUCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 26175 | 0.68 | 0.637666 |
Target: 5'- aUCaUCGGCgCGGCGgUGGCCGcugcGGGCGu -3' miRNA: 3'- -AGaAGCUG-GUCGUgACUGGCu---UCUGC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 31921 | 0.68 | 0.660576 |
Target: 5'- gUCaUCGGCCAuCGCUGAUCGGcauGGGCc -3' miRNA: 3'- -AGaAGCUGGUcGUGACUGGCU---UCUGc -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 35283 | 0.68 | 0.671994 |
Target: 5'- ---cCGGCCaAGCAuCUGGCCGggGcuCGg -3' miRNA: 3'- agaaGCUGG-UCGU-GACUGGCuuCu-GC- -5' |
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23064 | 3' | -52.5 | NC_005178.1 | + | 17654 | 0.67 | 0.694695 |
Target: 5'- ----aGACCGGCcaGgUGACCGucGAGACGg -3' miRNA: 3'- agaagCUGGUCG--UgACUGGC--UUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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